TRIM40 Vertebrate HGNC

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Vertebrate Homology

Source

Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
- human
- mouse
- rat
- zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 12/10/2024 MGI 6.24

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences select all deselect all Go
human	TRIM40	HGNC:18736 (HGNC) 135644 (Entrez Gene) 616976 (OMIM) TRIM40 (Alliance of Genome Resources)	Chr6 p22.1	Chr6:30136124-30148735 (+) GRCh38		Q6P9F5 (UniProt \| EBI) NM_001286633 (RefSeq)
mouse	Trim40	MGI:2684881 (MGI) 195359 (Entrez Gene) Gene Tree Trim40 (Alliance of Genome Resources)	Chr17 19.16 cM	Chr17:37192490-37201015 (-) GRCm39		ENSMUSG00000073399 (Ensembl Gene Model) ENSMUSP00000084400 (Ensembl) ENSMUST00000087158 (Ensembl)
rat	Trim40	RGD:1359645 (Rat Genome Database) 365528 (Entrez Gene) Trim40 (Alliance of Genome Resources)	Chr20 p12			Q6MFY8 (UniProt \| EBI) NM_001009175 (RefSeq)
zebrafish	si:ch73-364h19.2	ZDB-GENE-131119-21 (Zebrafish Model Organism Database) 100537438 (Entrez Gene) si:ch73-364h19.2 (Alliance of Genome Resources)	ChrUN			XP_003198243 (RefSeq)
	si:ch211-114c12.5	ZDB-GENE-060526-13 (Zebrafish Model Organism Database) 565476 (Entrez Gene) si:ch211-114c12.5 (Alliance of Genome Resources)	Chr5			XP_068074327 (RefSeq)
	si:ch211-120g10.1	ZDB-GENE-130531-56 (Zebrafish Model Organism Database) 556805 (Entrez Gene) si:ch211-120g10.1 (Alliance of Genome Resources)	Chr3			XP_684799 (RefSeq)
	si:dkey-18p12.4	ZDB-GENE-070912-408 (Zebrafish Model Organism Database) 794946 (Entrez Gene) si:dkey-18p12.4 (Alliance of Genome Resources)	Chr9			NP_001116179 (RefSeq) NM_001122707 (RefSeq)
	si:dkey-219e21.2	ZDB-GENE-141215-26 (Zebrafish Model Organism Database) 797371 (Entrez Gene) si:dkey-219e21.2 (Alliance of Genome Resources)	Chr12			XP_021335987 (RefSeq)
	zgc:194990	ZDB-GENE-081022-171 (Zebrafish Model Organism Database) 568410 (Entrez Gene) zgc:194990 (Alliance of Genome Resources)	Chr8			NP_001124262 (RefSeq) NM_001130790 (RefSeq)