Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	HOXD13	HGNC:5136 (HGNC) 3239 (Entrez Gene) 142989 (OMIM) HOXD13 (Alliance of Genome Resources)	Chr2 q31.1	Chr2:176087487-176095944 (+) GRCh38	brachydactyly brachydactyly-syndactyly syndrome brachydactyly type A4 brachydactyly type D brachydactyly type E1 clubfoot cryptorchidism syndactyly type 5	P35453 (UniProt | EBI) NM_000523 (RefSeq)
mouse	Hoxd13	MGI:96205 (MGI) 15433 (Entrez Gene) Gene Tree Hoxd13 (Alliance of Genome Resources)	Chr2 44.13 cM	Chr2:74498654-74501943 (+) GRCm39	synpolydactyly	ENSMUSG00000001819 (Ensembl Gene Model) ENSMUSP00000001872 (Ensembl) ENSMUST00000001872 (Ensembl)
rat	Hoxd13	RGD:1308417 (Rat Genome Database) 288154 (Entrez Gene) Hoxd13 (Alliance of Genome Resources)	Chr3 q23			NP_001099356 (RefSeq) NM_001105886 (RefSeq)
zebrafish	hoxd13a	ZDB-GENE-990415-119 (Zebrafish Model Organism Database) 30407 (Entrez Gene) hoxd13a (Alliance of Genome Resources)	Chr9			NP_571244 (RefSeq) NM_131169 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.