Vertebrate Homology

• Source: Alliance of Genome Resources

Multiple Genome Viewer

Comparative GO Graph (mouse, human, rat, zebrafish)  

Alliance Homology Information

Species	Symbol	Gene Links	Genetic Location	Genome Coordinates (mouse and human only)	Associated Human Diseases	Sequences
human	H1-1	HGNC:4715 (HGNC) 3024 (Entrez Gene) 142709 (OMIM) H1-1 (Alliance of Genome Resources)	Chr6 p22.2	Chr6:26017032-26017787 (-) GRCh38		Q02539 (UniProt | EBI) NM_005325 (RefSeq)
mouse	H1f1	MGI:1931523 (MGI) 80838 (Entrez Gene) Gene Tree H1f1 (Alliance of Genome Resources)	Chr13 9.91 cM	Chr13:23947649-23948389 (+) GRCm39		ENSMUSG00000049539 (Ensembl Gene Model) ENSMUSP00000062030 (Ensembl) ENSMUST00000055770 (Ensembl)
rat	H1f1	RGD:1305706 (Rat Genome Database) 291145 (Entrez Gene) H1f1 (Alliance of Genome Resources)	Chr17 p11			D4A3K5 (UniProt | EBI) NM_001106113 (RefSeq)
zebrafish	histh1l3	ZDB-GENE-131121-2 (Zebrafish Model Organism Database) 100334868 (Entrez Gene) histh1l3 (Alliance of Genome Resources)	Chr25			XP_002666950 (RefSeq)
	si:ch73-368j24.11	ZDB-GENE-160113-46 (Zebrafish Model Organism Database) 562307 (Entrez Gene) si:ch73-368j24.11 (Alliance of Genome Resources)	Chr7			XP_005168858 (RefSeq)
	si:ch211-103n10.5	ZDB-GENE-030131-5155 (Zebrafish Model Organism Database) 559526 (Entrez Gene) si:ch211-103n10.5 (Alliance of Genome Resources)	Chr8			NP_001373259 (RefSeq) NM_001386330 (RefSeq)
	si:dkey-23a13.17	ZDB-GENE-160113-52 (Zebrafish Model Organism Database) 571135 (Entrez Gene) si:dkey-23a13.17 (Alliance of Genome Resources)	Chr7			NP_001373655 (RefSeq) NM_001386726 (RefSeq)
	si:dkey-108k21.21	ZDB-GENE-131127-5 (Zebrafish Model Organism Database) 100332815 (Entrez Gene) si:dkey-108k21.21 (Alliance of Genome Resources)	Chr25
	zgc:110425	ZDB-GENE-050522-103 (Zebrafish Model Organism Database) 553782 (Entrez Gene) zgc:110425 (Alliance of Genome Resources)	Chr7			NP_001018582 (RefSeq) NM_001020746 (RefSeq)
	zgc:153405	ZDB-GENE-060825-170 (Zebrafish Model Organism Database) 751661 (Entrez Gene) zgc:153405 (Alliance of Genome Resources)	Chr25			NP_001038843 (RefSeq) NM_001045378 (RefSeq)
	zgc:163061	ZDB-GENE-070410-132 (Zebrafish Model Organism Database) 100037379 (Entrez Gene) zgc:163061 (Alliance of Genome Resources)	Chr7			NP_001083000 (RefSeq) NM_001089531 (RefSeq)

Alliance Homology Information

MGI loads orthology data based on the 'stringent' set from the Alliance of Genome Resources. The Alliance sets are based on a scoring system developed by the Alliance in collaboration with DIOPT.

MGI includes orthology for the following vertebrate species from the Alliance:
 - human
 - mouse
 - rat
 - zebrafish

These are a subset of the total species represented in the Alliance; there may be stringent set orthologs in other Alliance species.