Gene Expression Image Detail

Reference

Figure

ID

J:281311 Nakano Y, et al., Cell Rep. 2019 Apr 16;27(3):860-871.e8

S4

MGI:7540992

Image

Caption

(C,D) RT-PCR analysis of alternative splicing of the indicated exons of wild-type (WT) and dMut (Srrm3^gt/gt;Srrm4^bv/bv) on E19. The RT-PCR primers were designed from the constitutive exons (white boxes) flanking the tested alternative exons (red boxes). Purple boxes indicate alternative exons whose SRRM3-SRRM4-dependent regulation is revealed by RT-PCR but was not detected by MJAY analysis. Black boxes indicate alternative exons not regulated by SRRM3-SRRM4. Thin rectangles indicate UTRs. Asterisks indicate splice forms that are predicted to be the subject of nonsense-mediated mRNA decay (NMD). Exon (ex) numbers are shown if more than one exon in the same transcript is regulated by SRRM3-SRRM4. Arrowheads indicate two sets of primer pairs used for the analysis of Atl2 splicing (C). on E19. Asterisk indicates a Cacnb4 splice form that is predicted to be the subject of NMD (D). Abbreviation: nonsense-mediated mRNA decay (NMD)

Copyright

This image is from Nakano Y, Cell Rep 2019 Apr 16;27(3):860-871.e8, and is displayed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License.

Associated
Assays

Label	Assay & Result Details (Gene Symbol)	Spatial Mapping
C Agrn	MGI:7543184 (Agrn)
C Ahi1	MGI:7543185 (Ahi1)
C Ank3 top	MGI:7543186 (Ank3)
C Ank3 bottom	MGI:7543187 (Ank3)
C Antxr1	MGI:7543188 (Antxr1)
C Ap1s2	MGI:7543189 (Ap1s2)
C Arfgap1	MGI:7543190 (Arfgap1)
C Atl2 top	MGI:7543191 (Atl2)
C Atl2 bottom	MGI:7543192 (Atl2)
C Atp2a2	MGI:7543193 (Atp2a2)
C Bak1	MGI:7543194 (Bak1)
C Bbs9	MGI:7543195 (Bbs9)
C Bnip2	MGI:7543196 (Bnip2)
C beta-Snap, Napb	MGI:7543197 (Napb)
C Cacna2d2	MGI:7543198 (Cacna2d2)
C Cadps	MGI:7543199 (Cadps)
C Camta1	MGI:7543200 (Camta1)
C Ccser2	MGI:7543201 (Ccser2)
C Chchd3	MGI:7543202 (Chchd3)
C Chpt1	MGI:7543203 (Chpt1)
C Ckap5	MGI:7543204 (Ckap5)
C Clasp1	MGI:7543205 (Clasp1)
C Cpeb3	MGI:7543206 (Cpeb3)
C Csnk1g3	MGI:7543207 (Csnk1g3)
C Dnm3	MGI:7543208 (Dnm3)
C Dock9 top	MGI:7543209 (Dock9)
C Dock9 bottom	MGI:7543210 (Dock9)
C Dopey1 top	MGI:7543211 (Dop1a)
C Dopey1 bottom	MGI:7543212 (Dop1a)
C Dtna	MGI:7543213 (Dtna)
C Dync1i2	MGI:7543214 (Dync1i2)
C Erc1 top	MGI:7543215 (Erc1)
C Erc1 bottom	MGI:7543216 (Erc1)
C Ergic3	MGI:7543217 (Ergic3)
C Ewsr1	MGI:7543218 (Ewsr1)
C Gabbr1	MGI:7543219 (Gabbr1)
C Gramd1a	MGI:7543220 (Gramd1a)
C Gramd1b	MGI:7543221 (Gramd1b)
C Grin1	MGI:7543222 (Grin1)
C Itpr1	MGI:7543223 (Itpr1)
C Kif1a top	MGI:7543224 (Kif1a)
C Kif1a bottom	MGI:7543225 (Kif1a)
C Kif1b	MGI:7543226 (Kif1b)
C Madd top	MGI:7543227 (Madd)
C Madd bottom	MGI:7543228 (Madd)
C Mbnl2	MGI:7543229 (Mbnl2)
C Mef2a	MGI:7543230 (Mef2a)
C Nrcam top	MGI:7543231 (Nrcam)
C Nrcam bottom	MGI:7543232 (Nrcam)
C Nrxn1	MGI:7543233 (Nrxn1)
C Nsmf	MGI:7543234 (Nsmf)
C Ogdh	MGI:7543235 (Ogdh)
C Parp6	MGI:7543236 (Parp6)
C Peg3	MGI:7543237 (Peg3)
C Picalm	MGI:7543238 (Picalm)
C Ppp3ca	MGI:7543239 (Ppp3ca)
C Ppp6r3	MGI:7543241 (Ppp6r3)
C Ptprk	MGI:7543242 (Ptprk)
C Ptprm	MGI:7543243 (Ptprm)
C R3hdm1	MGI:7543244 (R3hdm1)
C Sgip1	MGI:7543245 (Sgip1)
C Sh3glb1	MGI:7543246 (Sh3glb1)
C Shank2	MGI:7543247 (Shank2)
C Snap91 top	MGI:7543248 (Snap91)
C Snap91 middle	MGI:7543249 (Snap91)
C Snap91 bottom	MGI:7543250 (Snap91)
C Snx2	MGI:7543251 (Snx2)
C Spag9	MGI:7543252 (Spag9)
C Srrm4	MGI:7543253 (Srrm4)
C Ssr1	MGI:7543254 (Ssr1)
C Stx1a	MGI:7543255 (Stx1a)
C Synj1 top	MGI:7543256 (Synj1)
C Synj1 middle	MGI:7543257 (Synj1)
C Synj1 bottom	MGI:7543258 (Synj1)
C Sypl	MGI:7543259 (Sypl1)
C Tanc2	MGI:7543260 (Tanc2)
C Vps13c	MGI:7543261 (Vps13c)
C Wdr35	MGI:7543262 (Wdr35)
D Lsd1	MGI:7543181 (Kdm1a)
D Phf21a	MGI:7543183 (Phf21a)
D Cacnb4	MGI:7543180 (Cacnb4)
D Mef2c	MGI:7543182 (Mef2c)