Mapping Data

Experiment

• Experiment
  TEXT-QTL
• Chromosome
  1
• Reference
  J:40771 Kemp SJ, et al., Localization of genes controlling resistance to trypanosomiasis in mice. Nat Genet. 1997 Jun;16(2):194-6
• ID
  MGI:1095678

Genes

Gene	Assay Type
Tir3	visible phenotype
D1Nds2	PCR amplified length variant
D1Mit17	PCR amplified length variant
D1Mit425	PCR amplified length variant

Notes

• Experiment
  A significant variation in the susceptibility of tryponosomiasis in inbred strains of mice enabled the quantitative analysis (QTL) of the trait in genetic crosses. The C57BL/6 strain is relatively resistant compared to the more susceptible strains BALB/cand A/J.
  
  Linkage analysis was performed on F2 mice from both a (BALB/cOlaHsd x C57BL/6JOlaHsd)F2 cross and an (A/JOlaHsd x C57BL/6JOlaHsd)F2 cross. Genotyping was performed on mice with long and those with short survival times selecting for informative microsatellite markers providing coverage of all 19 autosomes and the X chromosome.
  
  Analysis of the (BALB/cOlaHsd x C57BL/6JOlaHsd)F2 cross revealed 3 regions with significant LOD scores.
  
  QTL Tir1 mapped to a region of Chromosome 17 between flanking markers D17Mit135 and D17Mit7 with a LOD score of 11.0 [Fig.1]. Tir1 had an additive effect on survival time and accounted for 14.6% of the variation. D17Mit36 mapped nearest the peak LOD score.
  
  QTL Tir2 mapped to a region of Chromosome 5 between flanking markers D5Mit233 and D5Mit10 with a LOD score of 4.6 [Fig.1]. Tir2 also had a significant association with survival time with the resistance allele found to be fully dominant, accounting for 6.7% of the variation. D5Mit58 mapped nearest the peak LOD score.
  
  QTL Tir3 mapped to a region of Chromosome 1 between flanking markers D1Nds2 and D1Mit17 with a LOD score of 5.7 [Fig.1]. This QTL had a additive effect and accounted for 8.9% of the variation. D1Mit425 mapped nearest the peak LOD score.
  
  Analysis of the(A/JOlaHsd x C57BL/6JOlaHsd)F2 cross revealed 2 regions with significant LOD scores on both Chromosome 17 and Chromosome 5. The positions of both QTL appeared to be close to those mapped in (BALB/cOlaHsd x C57BL/6JOlaHsd)F2 cross.
  
  5.27.2015 - Curators Note. Because the second cross here differs from the first we regard the second cross as a separate mapping experiment have have assigned the QTL identified on Chromosomes 17 and 5 with unique identifiers.
  
  In the (A/JOlaHsd x C57BL/6JOlaHsd)F2 cross QTL Tir4 mapped to a region of Chromosome 17 flanked by markers D17Mit28 and D17Mit68 with a LOD score of 9.3 [Fig.1]. Tir4 accounted for 9% of the total variance. D17Mit52 mapped nearest the peak LOD score. The resistance allele was recessive.
  
  In the same cross QTL Tir5 mapped to a region of Chromosme 5 between flanking markers D5Mit255 and D5Mit24 with a LOD score of 3.6 [Fig.1]. Tir5 accounted for 3.9% of the variance and the resistance allele was recessive.
  
  A QTL on Chromosome 1 in the (A/JOlaHsd x C57BL/6JOlaHsd)F2 cross did not acheive significance.