Mapping Data

Experiment

• Experiment
  RI
• Chromosome
  2
• Reference
  J:21511 Kaushik N, et al., Intracisternal A-type particle elements as genetic markers: detection by repeat element viral element amplified locus-PCR. Mamm Genome. 1994 Nov;5(11):688-95
• ID
  MGI:1196949

Genes

Gene	Assay Type	Description
Hoxd9	reported elsewhere
Actc1	reported elsewhere
B2m	reported elsewhere
a	reported elsewhere
Iap3ra1	PCR amplified length variant	JS139, JS134
Iap3rb8	PCR amplified length variant	JS139, JS135
Iap3rc10	PCR amplified length variant	JS139, JS136
Iap5ra7	PCR amplified length variant	JS140, JS134
Iap5rb11	PCR amplified length variant	JS140, JS135
Iap5rc3	PCR amplified length variant	JS140, JS136
Iap5rc4	PCR amplified length variant

RI

• Origin
  C57BL/6J x C3H/HeJ
• Designation
  BXH
• Abbreviation 1
  B
• Abbreviation 2
  H

RI Data (columns show RI Lines sampled)

Marker	2	3	4	6	7	8	9	10	11	12	14	19
Iap3ra1	B	H	B	H	B	H	H	B	B	H	H	B
Iap3rb8	B	H	B	H	B	H	H	B	B	H	H	B
Iap3rc10	B	H	B	H	B	H	H	B	B	H	H	B
Iap5ra7	B	B	H	B	H	B	B	H	B	B	B	B
Iap5rb11	B	B	H	B	H	B	B	H	B	B	B	B
Iap5rc3	B	B	B	B	B	H	B	H	B	B	H	B
Iap5rc4	B	B	B	B	B	H	B	H	B	H	H	B

2x2 Data

Marker 1	Marker 2	Discordant	Strains	RI Sets
Iap5ra7	Hoxd9	0	12	BXH
Iap5rb11	Hoxd9	0	12	BXH
Iap5rc3	Actc1	0	12	BXH
Iap5rc4	B2m	0	12	BXH
Iap3ra1	a	0	12	BXH
Iap3rb8	a	0	12	BXH
Iap3rc10	a	0	12	BXH

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Iap3ra1	Iap3rb8	0	12	0.000	0.000
Iap3rb8	Iap3rc10	0	12	0.000	0.000
Iap3rc10	Iap5ra7	9	12	-150.000	200.000
Iap5ra7	Iap5rb11	0	12	0.000	0.000
Iap5rb11	Iap5rc3	4	12	16.667	13.608
Iap5rc3	Iap5rc4	1	12	2.381	2.605