Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  5
• Reference
  J:41383 King DP, et al., The mouse Clock mutation behaves as an antimorph and maps within the W19H deletion, distal of Kit. Genetics. 1997 Jul;146(3):1049-60
• ID
  MGI:1327234

Genes

Gene	Assay Type	Description
D5Mit83	reported elsewhere
D5Mit58	reported elsewhere
D5Mit135	reported elsewhere
D5Mit235	reported elsewhere
D5Mit201	reported elsewhere
Pdgfra	SSLP	Pdgfra forward/Pdgfra reverse
Kit	Southern analysis	Kit cDNA10
D5Mit307	reported elsewhere
Clock	SSLP	Clock-pA, Clock-pB
D5Mit357	reported elsewhere
D5Mit309	reported elsewhere
D5Mit271	reported elsewhere
D5Mit114	reported elsewhere
D5Mit236	reported elsewhere
Csn2	reported elsewhere
Afp	reported elsewhere
D5Mit24	reported elsewhere

Notes

• Experiment
  C57BL/6J - Clock/+ N2 animals were two backcross generations removed from the ENU-treated animal. No recombinations were observed between the D5Mit235 and D5Mit201 loci in this cross.

CROSS

• Type
  Backcross, male
• Female Parent
  <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>/<b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  C57BL/6J
• Male Parent
  <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>/<b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  (BALB/cJ +/+ x C57BL/6J-Clock N2)F1-Clock
• Allele 1
  b from C57BL/6J
• Allele 2
  c from BALB/cJ

2x2 Data Reported

Marker 1	Marker 2	# Recombinants	# Parentals
D5Mit83	D5Mit58	3	49
D5Mit58	D5Mit135	1	51
D5Mit135	D5Mit235	0	571
D5Mit135	D5Mit201	0	571
D5Mit235	Pdgfra	0	571
D5Mit201	Pdgfra	0	571
Pdgfra	Kit	1	570
Kit	D5Mit307	1	570
D5Mit307	Clock	1	570
Clock	D5Mit357	6	565
D5Mit357	D5Mit309	4	567
D5Mit309	D5Mit271	0	571
D5Mit271	D5Mit114	0	571
D5Mit114	D5Mit236	2	569
D5Mit236	Csn2	6	565
Csn2	Afp	2	569
Afp	D5Mit24	3	55

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D5Mit83	D5Mit58	3	52	5.769	3.233
D5Mit58	D5Mit135	1	52	1.923	1.904
D5Mit135	D5Mit235	0	571	0.000	0.000
D5Mit135	D5Mit201	0	571	0.000	0.000
D5Mit235	Pdgfra	0	571	0.000	0.000
D5Mit201	Pdgfra	0	571	0.000	0.000
Pdgfra	Kit	1	571	0.175	0.175
Kit	D5Mit307	1	571	0.175	0.175
D5Mit307	Clock	1	571	0.175	0.175
Clock	D5Mit357	6	571	1.051	0.427
D5Mit357	D5Mit309	4	571	0.701	0.349
D5Mit309	D5Mit271	0	571	0.000	0.000
D5Mit271	D5Mit114	0	571	0.000	0.000
D5Mit114	D5Mit236	2	571	0.350	0.247
D5Mit236	Csn2	6	571	1.051	0.427
Csn2	Afp	2	571	0.350	0.247
Afp	D5Mit24	3	58	5.172	2.908