Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  5
• Reference
  J:41383 King DP, et al., The mouse Clock mutation behaves as an antimorph and maps within the W19H deletion, distal of Kit. Genetics. 1997 Jul;146(3):1049-60
• ID
  MGI:1327238

Genes

Gene	Assay Type	Description
D5Mit83	reported elsewhere
D5Mit58	reported elsewhere
D5Mit135	reported elsewhere
D5Mit235	reported elsewhere
D5Mit201	reported elsewhere
Pdgfra	SSLP	Pdgfra forward/Pdgfra reverse
Kit	Southern analysis	Kit cDNA10
D5Mit307	reported elsewhere
Clock	SSLP	Clock-pA, Clock-pB
D5Mit357	reported elsewhere
D5Mit309	reported elsewhere
D5Mit271	reported elsewhere
D5Mit114	reported elsewhere
D5Mit236	reported elsewhere
Csn2	reported elsewhere
Afp	reported elsewhere
D5Mit24	reported elsewhere

Notes

• Experiment
  C57BL/6J - Clock/+ N2 animals were two backcross generations removed from the ENU-treated animal. No recombinations were observed between the D5Mit235 and D5Mit201 loci in this cross.

CROSS

• Type
  Backcross, female
• Female Parent
  <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>/<b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  (BALB/cJ +/+ x C57BL/6J-Clock N2)F1-Clock
• Male Parent
  <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>/<b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  C57BL/6J
• Allele 1
  b from C57BL/6J
• Allele 2
  c from BALB/cJ

2x2 Data Reported

Marker 1	Marker 2	# Recombinants	# Parentals
D5Mit83	D5Mit58	0	47
D5Mit58	D5Mit135	1	46
D5Mit135	D5Mit235	0	193
D5Mit135	D5Mit201	0	193
D5Mit235	Pdgfra	0	193
D5Mit201	Pdgfra	0	193
Pdgfra	Kit	1	192
Kit	D5Mit307	2	191
D5Mit307	Clock	1	192
Clock	D5Mit357	2	191
D5Mit357	D5Mit309	0	193
D5Mit309	D5Mit271	2	191
D5Mit271	D5Mit114	1	192
D5Mit114	D5Mit236	0	193
D5Mit236	Csn2	2	191
Csn2	Afp	1	192
Afp	D5Mit24	3	48

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D5Mit83	D5Mit58	0	47	0.000	0.000
D5Mit58	D5Mit135	1	47	2.128	2.105
D5Mit135	D5Mit235	0	193	0.000	0.000
D5Mit135	D5Mit201	0	193	0.000	0.000
D5Mit235	Pdgfra	0	193	0.000	0.000
D5Mit201	Pdgfra	0	193	0.000	0.000
Pdgfra	Kit	1	193	0.518	0.517
Kit	D5Mit307	2	193	1.036	0.729
D5Mit307	Clock	1	193	0.518	0.517
Clock	D5Mit357	2	193	1.036	0.729
D5Mit357	D5Mit309	0	193	0.000	0.000
D5Mit309	D5Mit271	2	193	1.036	0.729
D5Mit271	D5Mit114	1	193	0.518	0.517
D5Mit114	D5Mit236	0	193	0.000	0.000
D5Mit236	Csn2	2	193	1.036	0.729
Csn2	Afp	1	193	0.518	0.517
Afp	D5Mit24	3	51	5.882	3.295