Mapping Data

Experiment

• Experiment
  TEXT-Physical Mapping
• Chromosome
  1
• Reference
  J:52606 Eddleston J, et al., Physical and transcriptional map of a 3-Mb region of mouse chromosome 1 containing the gene for the neural tube defect mutant loop-tail (Lp). Genomics. 1999 Mar 1;56(2):149-59
• ID
  MGI:1334528

Genes

Gene	Assay Type
Fcer1g	overlapping clones, PCR amplified length variant
Apoa2	overlapping clones, PCR amplified length variant
Usp21	overlapping clones, PCR amplified length variant
Ufc1	overlapping clones, PCR amplified length variant
Nit1	overlapping clones, PCR amplified length variant
Pfdn2	overlapping clones, PCR amplified length variant
B4galt3	overlapping clones, PCR amplified length variant
Usf1	overlapping clones, PCR amplified length variant
Klhdc9	overlapping clones, PCR amplified length variant
Nr1i3	overlapping clones, PCR amplified length variant
F11r	overlapping clones, PCR amplified length variant
D1Sta1	overlapping clones, PCR amplified length variant
D1Mit113	overlapping clones, PCR amplified length variant
Cd48	overlapping clones, PCR amplified length variant
Ly9	overlapping clones, PCR amplified length variant
Nhlh1	overlapping clones, PCR amplified length variant
D1Sta2	overlapping clones, PCR amplified length variant
Copa	overlapping clones, PCR amplified length variant
Pex19	overlapping clones, PCR amplified length variant
Dcaf8	overlapping clones, PCR amplified length variant
Pea15a	overlapping clones, PCR amplified length variant
D1Sta3	overlapping clones, PCR amplified length variant
Atp1a2	overlapping clones, PCR amplified length variant
Igsf8	overlapping clones, PCR amplified length variant
Kcnj9	overlapping clones, PCR amplified length variant
Tagln2	overlapping clones, PCR amplified length variant
Crp	overlapping clones, PCR amplified length variant
D1Mit354	overlapping clones, PCR amplified length variant
Or10j5	overlapping clones, PCR amplified length variant
D1Sta4	overlapping clones, PCR amplified length variant
Apcs	overlapping clones, PCR amplified length variant
D1Mit206	overlapping clones, PCR amplified length variant
Fcer1a	overlapping clones, PCR amplified length variant
D1Sta5	overlapping clones, PCR amplified length variant
Ackr1	overlapping clones, PCR amplified length variant
D1Sta6	overlapping clones, PCR amplified length variant
D1Sta7	overlapping clones, PCR amplified length variant
D1Sta8	overlapping clones, PCR amplified length variant
D1Sta9	overlapping clones, PCR amplified length variant
Ifi204	overlapping clones, PCR amplified length variant
D1Sta10	overlapping clones, PCR amplified length variant
D1Sta11	overlapping clones, PCR amplified length variant
D1Sta12	overlapping clones, PCR amplified length variant
Spta1	overlapping clones, PCR amplified length variant
D1Mit540	overlapping clones, PCR amplified length variant
D1Mit150	overlapping clones, PCR amplified length variant
D1Sta13	overlapping clones, PCR amplified length variant
D1Mit541	overlapping clones, PCR amplified length variant
D1Sta14	overlapping clones, PCR amplified length variant

Notes

• Experiment
  The authors used information from a backcross to refine the genetic map of the Lp region. The Lp region was cloned in a YAC contig of 63 YACs spanning 3.2 Mb. By combining data from the physical and genetic maps, the Lp critical region haas been narrowedto an interval of ~1000kb. YAC end STSs and mouse ETSs were used in the construction of the physical map of the region. The order of the genes/markers on mouse Chromosome 1 is: centromere - (W57327, W48336, W53272, AA104562, Apoa2, AA062310, Fcer1g) - (AA209988, Usf1, AA087357) - AA638916 - D1Sta1 - D1Mit113 - Cd48 - Ly9 - Nhlh1 - D1Sta2 - Copa - Pex19 - D1Ucla4 - Pea15 - D1Sta3 - Atp1a2 - Igsf8 - Kcnj9 - Tagln2 - Crp - D1Mit354 - Olfr16 - D1Sta4 - Apcs - D1Mit206 - Fcer1a - D1Sta5 - Darc - D1Sta6 - D1Sta7 - D1Sta8 - D1Sta9 - Ifi204 - D1Sta10 - D1Sta11 - (D1Mit540, D1Sta12, Spna1) - D1Mit50 - D1Sta13 - D1Mit541 - D1Sta14. Markers within brackets are not ordered with respect to each other.