Mapping Data

Experiment

• Experiment
  TEXT-Physical Mapping
• Chromosome
  7
• Reference
  J:49393 Wines ME, et al., Physical localization of the mouse aryl hydrocarbon receptor nuclear translocator-2 (Arnt2) gene within the c112K deletion. Genomics. 1998 Jul 15;51(2):223-32
• ID
  MGI:1337279

Genes

Gene	Assay Type	Description
D7Mit261
M-02922	overlapping clones, PCR amplified length variant
M-10625	overlapping clones, PCR amplified length variant
M-04373	overlapping clones, PCR amplified length variant
46O1-T7	overlapping clones, PCR amplified length variant
42F4-T7	overlapping clones, PCR amplified length variant
Arnt2	overlapping clones, Southern analysis	Arnt2 cDNA2
p174A19-Sp6	overlapping clones, PCR amplified length variant
Del(7)Tyr^c-3H-p	overlapping clones, PCR amplified length variant, direct sequencing
Fah
D7Mit62	overlapping clones, PCR amplified length variant
D7Cwr11P
Tyr
D7Cwr3D
Eed
D7Mit352

Notes

• Experiment
  The authors constructed a 840kb BAC contig spanning the c-112K and c-3H proximal breakpoints. These breakpoints were found to be separated by 320-350kb. The authors used Southern analysis of these overlapping clones to physically map the Arnt2 gene to this deletion on mouse Chromosome 7. The Arnt2 gene spans 130-170kb of this interval and is completely deleted by the c-112K deletion. Using this BAC contig, the authors were able to construct a physical map of the loci around the c-112K and c-3H deletion on mouse Chromosome 7. The order of the loci is: D7Mit261 - M-02922 - M-10625 - M-04373 - 46O1-T7 - 42F4-T7 - Arnt2 - p174A19-Sp6 - Del(7)Tyr C-3H-p - Fah - D7Mit62 - D7Cwr11P - Tyr - D7Cwr3D - Eed - D7Mit352.