Mapping Data

Experiment

• Experiment
  RI
• Chromosome
  1
• Reference
  J:12786 Malo D, et al., High-resolution linkage map in the vicinity of the host resistance locus Bcg. Genomics. 1993 Jun;16(3):655-63
• ID
  MGI:1340193

Genes

Gene	Allele	Assay Type
Tnp1
D1Mcg2		PCR amplified length variant
Vil1		visible phenotype
Slc11a1	Slc11a1^s	reported elsewhere
D1Mit7		PCR amplified length variant
D1Mcg7		PCR amplified length variant
Inha		reported elsewhere
D1Mcg3		PCR amplified length variant
Des		reported elsewhere

Notes

• Reference
  Authors use Lsh for Nramp1, Lsh is an allele of Nramp1.

RI

• Origin
  C57BL/6J x DBA/2J
• Designation
  BXD
• Abbreviation 1
  B
• Abbreviation 2
  D

RI Data (columns show RI Lines sampled)

Marker	1	2	5	6	8	9	11	12	13	14	15	16	18	19	20	21	22	23	24	25	27	28	29	30	31	32
Tnp1	D	B	B	D	D	B	B	B	D	B	D	B	B	B	B	B	B	D	B	D	D	D	D	D	B	D
D1Mcg2	D	B	B	D	D	B	B	B	D	B	D	B	B	B	B	B	B	D	B	D	D	D	B	D	B	D
Vil1	D	B	B	D	D	B	B	B	D	B	D	B	B	B	B	B	B	D	B	D	D	D	B	D	B	D
Slc11a1	D	B	B	D	D	B	B	B	D	B	D	B	B	B	B	B	B	D	B	D	D	D	B	D	B	D
D1Mit7	D	B	B	D	D	B	B	B	D	B	D	B	B	B	B	B	B	D	B	D	D	D	B	D	B	D
D1Mcg7	D	B	B	D	D	B	B	B	D	B	D	B	B	B	B	B	B	D	B	D	D	D	B	D	B	D
Inha	D	B	B	D	D	B	B	B	D	B	D	B	B	B	B	B	B	D	B	D	D	D	B	D	B	D

2x2 Data

Marker 1	Marker 2	Discordant	Strains	RI Sets
D1Mcg2	D1Mcg3	0	26	BXD
D1Mcg3	Vil1	0	26	BXD
Des	Inha	0	26	BXD

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Tnp1	D1Mcg2	1	26	1.020	1.062
D1Mcg2	Vil1	0	26	0.000	0.000
Vil1	Slc11a1	0	26	0.000	0.000
Slc11a1	D1Mit7	0	26	0.000	0.000
D1Mit7	D1Mcg7	0	26	0.000	0.000
D1Mcg7	Inha	0	26	0.000	0.000