Mapping Data

Experiment

• Experiment
  RI
• Chromosome
  4
• Reference
  J:49829 Taylor BA, et al., Genotyping new BXD recombinant inbred mouse strains and comparison of BXD and consensus maps. Mamm Genome. 1999 Apr;10(4):335-48
• ID
  MGI:1343301

Genes

Gene	Assay Type
D4Mit149	PCR amplified length variant
D4Mit235	PCR amplified length variant
D4Mit193	PCR amplified length variant
D4Mit237a	PCR amplified length variant
D4Mit89	PCR amplified length variant
D4Mit111	PCR amplified length variant
D4Mit164	PCR amplified length variant
D4Mit178	PCR amplified length variant
D4Mit322	PCR amplified length variant
D4Mit80	PCR amplified length variant
Tyrp1	PCR amplified length variant
D4Mit327	PCR amplified length variant
D4Mit303	PCR amplified length variant
D4Mit146	PCR amplified length variant
D4Mit12	PCR amplified length variant
D4Mit147	PCR amplified length variant
D4Mit203	PCR amplified length variant
D4Mit158	PCR amplified length variant
D4Mit54	PCR amplified length variant
D4Mit312	PCR amplified length variant
D4Mit127	PCR amplified length variant
H6pd	PCR amplified length variant
D4Mit33	PCR amplified length variant
D4Mit42	PCR amplified length variant

RI

• Origin
  C57BL/6J x DBA/2J
• Designation
  BXD
• Abbreviation 1
  B
• Abbreviation 2
  D

RI Data (columns show RI Lines sampled)

Marker	1	2	5	6	8	9	11	12	13	14	15	16	18	19	20	21	22	23	24	25	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42
D4Mit149	B	B	B	B	B	D	D	B	D	B	D	D	D	D	B	B	B	B	D	D	B	B	B	D	B	D	B	D	D	D	D	D	B	B	D	B
D4Mit235	B	B	B	B	B	B	D	B	D	B	D	B	D	D	B	B	D	B	D	D	D	B	B	D	B	D	B	D	D	D	D	D	B	B	D	B
D4Mit193	D	B	B	B	B	B	B	B	D	B	B	B	B	D	B	D	D	B	D	D	B	B	B	D	B	D	B	D	D	D	D	D	D	B	D	D
D4Mit237a	D	B	B	B	B	B	B	B	D	B	B	B	B	B	B	D	D	B	D	D	B	B	B	D	B	B	B	B	B	D	D	D	D	B	D	B
D4Mit89	D	B	B	B	B	B	B	B	D	B	D	B	B	B	B	D	D	B	D	D	B	B	B	D	B	B	B	B	B	D	D	D	D	B	D	B
D4Mit111	D	B	B	B	B	B	B	B	D	B	D	B	B	B	B	D	D	B	D	D	B	B	B	B	B	B	B	B	B	D	D	B	D	B	D	B
D4Mit164	D	B	B	B	B	B	B	B	D	B	D	B	B	B	B	D	D	B	D	D	B	B	B	B	B	B	B	B	B	D	D	B	B	B	D	B
D4Mit178	D	B	B	B	B	D	B	B	D	B	D	B	B	B	B	D	B	B	D	D	D	B	B	D	B	B	B	B	B	D	D	B	B	B	D	B
D4Mit322	D	B	B	B	B	D	B	B	D	B	D	B	B	B	B	D	B	B	D	D	D	B	B	D	B	B	B	B	B	D	D	B	B	B	D	B
D4Mit80	D	B	B	B	B	D	B	B	D	B	D	B	B	B	B	D	B	B	D	D	D	D	B	D	B	.	B	B	B	D	D	B	B	B	D	B
Tyrp1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	B	B	D	D	.	B	B	D	B
D4Mit327	D	B	B	B	B	D	B	B	D	B	D	B	B	D	B	D	D	B	D	D	D	D	B	D	B	B	B	B	B	D	D	B	B	B	D	B
D4Mit303	D	B	B	B	B	D	B	D	D	D	D	B	D	D	B	D	D	D	B	D	D	D	D	D	B	B	B	B	B	D	D	B	B	D	D	.
D4Mit146	D	B	D	B	B	D	B	D	B	D	D	D	D	D	B	D	D	D	B	D	D	D	D	D	B	D	D	B	B	D	D	B	B	D	D	.
D4Mit12	D	B	D	B	D	D	B	D	D	D	D	D	D	D	B	D	B	D	B	D	D	D	D	D	B	D	D	D	B	D	D	D	B	D	D	B
D4Mit147	D	B	D	B	D	D	B	D	D	D	B	D	D	D	B	D	B	D	B	D	D	D	D	D	B	D	D	D	B	D	D	D	B	D	D	B
D4Mit203	D	B	B	B	D	D	B	D	D	D	B	D	D	B	B	D	B	D	B	D	B	D	B	D	B	D	D	D	B	B	D	D	B	D	D	B
D4Mit158	D	B	B	B	D	B	B	D	D	D	D	D	D	B	B	D	B	D	B	B	B	D	B	D	B	D	D	D	D	D	D	D	B	D	D	B
D4Mit54	D	B	B	B	D	B	B	D	D	D	D	D	D	B	B	D	B	D	B	B	B	D	B	D	B	D	D	D	D	D	D	D	B	D	D	B
D4Mit312	D	B	D	B	D	B	B	D	D	D	D	D	D	B	B	D	B	D	B	B	B	D	B	D	B	D	D	D	D	D	D	D	B	B	D	B
D4Mit127	D	B	D	B	D	B	B	D	D	D	B	D	D	B	B	D	B	B	B	B	B	D	B	D	B	D	B	D	D	B	D	B	B	B	D	.
H6pd	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	D	D	B	D	B	B	B	D	B
D4Mit33	D	B	D	B	D	B	B	D	D	D	B	D	D	B	B	D	B	B	B	B	B	D	B	D	B	D	B	D	D	B	D	B	B	B	D	.
D4Mit42	D	B	D	B	D	B	B	D	D	D	B	D	B	B	B	D	B	B	B	B	B	D	B	D	B	D	B	D	D	D	D	B	B	B	D	.

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D4Mit149	D4Mit235	4	36	3.333	1.886
D4Mit235	D4Mit193	8	36	8.333	3.898
D4Mit193	D4Mit237a	5	36	4.386	2.299
D4Mit237a	D4Mit89	1	36	0.725	0.746
D4Mit89	D4Mit111	2	36	1.515	1.136
D4Mit111	D4Mit164	1	36	0.725	0.746
D4Mit164	D4Mit178	4	36	3.333	1.886
D4Mit178	D4Mit322	0	36	0.000	0.000
D4Mit322	D4Mit80	1	35	0.746	0.768
D4Mit80	Tyrp1	0	9	0.000	0.000
Tyrp1	D4Mit327	0	9	0.000	0.000
D4Mit327	D4Mit303	7	35	7.143	3.450
D4Mit303	D4Mit146	5	35	4.545	2.395
D4Mit146	D4Mit12	5	35	4.545	2.395
D4Mit12	D4Mit147	1	36	0.725	0.746
D4Mit147	D4Mit203	5	36	4.386	2.299
D4Mit203	D4Mit158	5	36	4.386	2.299
D4Mit158	D4Mit54	0	36	0.000	0.000
D4Mit54	D4Mit312	2	36	1.515	1.136
D4Mit312	D4Mit127	5	35	4.545	2.395
D4Mit127	H6pd	0	9	0.000	0.000
H6pd	D4Mit33	0	9	0.000	0.000
D4Mit33	D4Mit42	2	35	1.562	1.173