Mapping Data

Experiment

• Experiment
  RI
• Chromosome
  9
• Reference
  J:49829 Taylor BA, et al., Genotyping new BXD recombinant inbred mouse strains and comparison of BXD and consensus maps. Mamm Genome. 1999 Apr;10(4):335-48
• ID
  MGI:1343306

Genes

Gene	Assay Type
D9Mit90	PCR amplified length variant
D9Mit297	PCR amplified length variant
D9Mit227	PCR amplified length variant
Apoa1	PCR amplified length variant
D9Mit93	PCR amplified length variant
D9Mit4	PCR amplified length variant
D9Mit48	PCR amplified length variant
D9Mit302	PCR amplified length variant
Myo5a	PCR amplified length variant
Me1	PCR amplified length variant
D9Mit50	PCR amplified length variant
D9Mit182	PCR amplified length variant
D9Mit51	PCR amplified length variant
D9Mit20	PCR amplified length variant
D9Mit18	PCR amplified length variant

RI

• Origin
  C57BL/6J x DBA/2J
• Designation
  BXD
• Abbreviation 1
  B
• Abbreviation 2
  D

RI Data (columns show RI Lines sampled)

Marker	1	2	5	6	8	9	11	12	13	14	15	16	18	19	20	21	22	23	24	25	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42
D9Mit90	B	D	B	D	D	D	D	D	B	B	B	D	D	D	B	D	D	D	D	D	B	B	D	D	B	D	B	B	.	D	D	D	D	D	B	D
D9Mit297	B	D	B	D	D	D	D	D	B	B	B	D	D	D	B	D	D	D	D	D	B	B	D	D	B	D	B	B	.	D	D	D	D	D	B	.
D9Mit227	B	D	B	D	D	D	B	D	B	D	B	D	D	D	B	D	B	D	D	D	B	D	D	D	B	D	B	B	.	D	D	D	D	D	D	D
Apoa1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	.	D	D	D	D	D	D	D
D9Mit93	B	D	B	D	D	D	B	D	B	D	B	D	D	D	B	D	B	D	D	D	B	B	D	D	B	D	.	B	.	D	D	D	D	D	D	D
D9Mit4	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	B	D	.	B	D	D	D	D	D	D	D	D
D9Mit48	D	D	D	D	D	D	B	D	B	D	B	D	D	D	B	D	B	D	B	D	B	B	D	B	B	D	.	B	B	D	D	D	D	D	D	D
D9Mit302	D	D	D	B	D	D	B	D	B	D	B	D	D	D	B	D	D	D	B	D	B	B	D	D	B	D	D	B	B	D	D	D	D	.	.	D
Myo5a	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	B	B	B	D	D	D	D	D	.
Me1	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	B	B	.	B	D	D	D	D	D	.
D9Mit50	D	B	B	D	D	B	B	D	B	B	B	D	D	B	B	D	D	B	B	D	B	B	B	D	B	B	B	B	.	B	D	D	D	D	D	.
D9Mit182	D	B	B	D	D	B	B	D	B	B	B	B	D	B	D	D	D	B	B	D	B	B	B	D	B	D	B	B	B	B	D	B	B	D	B	.
D9Mit51	D	B	B	D	D	B	B	B	B	B	B	B	D	B	D	B	D	B	B	D	B	B	B	B	B	D	B	B	B	B	D	B	B	D	B	D
D9Mit20	B	D	B	B	D	B	B	B	B	B	B	B	D	B	D	D	D	B	B	D	B	B	B	B	D	D	B	B	B	B	D	B	D	D	B	B
D9Mit18	B	D	B	D	B	B	B	B	B	B	B	D	B	B	B	D	D	D	B	B	B	B	B	D	B	D	B	B	B	B	D	B	D	D	B	B

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D9Mit90	D9Mit297	0	34	0.000	0.000
D9Mit297	D9Mit227	5	34	4.717	2.500
D9Mit227	Apoa1	0	8	0.000	0.000
Apoa1	D9Mit93	0	8	0.000	0.000
D9Mit93	D9Mit4	2	12	5.556	4.781
D9Mit4	D9Mit48	1	13	2.174	2.361
D9Mit48	D9Mit302	3	33	2.632	1.677
D9Mit302	Myo5a	1	7	4.545	5.356
Myo5a	Me1	1	8	3.846	4.428
Me1	D9Mit50	0	8	0.000	0.000
D9Mit50	D9Mit182	6	34	6.000	3.023
D9Mit182	D9Mit51	3	35	2.459	1.558
D9Mit51	D9Mit20	7	36	6.863	3.287
D9Mit20	D9Mit18	9	36	10.000	4.619