Mapping Data

Experiment

• Experiment
  RI
• Chromosome
  3
• Reference
  J:49605 Mori M, et al., Genetic profile of the SMXA recombinant inbred mouse strains revealed with restriction landmark genomic scanning. Mamm Genome. 1998 Sep;9(9):695-709
• ID
  MGI:1352257

Genes

Gene	Assay Type	Description
D3Rik79	RLGS	NdA145
D3Mit62
D3Rik80	RLGS	NaSM139
D3Rik81	RLGS	NdSM17
D3Rik82	RLGS	NdSM47
D3Rik83	RLGS	NdSM152
D3Rik84	RLGS	NaA117
D3Rik85	RLGS	NdA53
D3Rik86	RLGS	NdA149
D3Rik87	RLGS	NaSM89
D3Rik88	RLGS	NaA93
D3Rik89	RLGS	NaSM136
D3Rik90	RLGS	NaSM123
D3Rik91	RLGS	NaA140
D3Rik92	RLGS	NdA141
D3Rik93	RLGS	NdSM93
D3Rik94	RLGS	NdA41
D3Rik95	RLGS	NdSM64
D3Rik96	RLGS	NdSM268
D3Rik97	RLGS	NdA198
D3Rik98	RLGS	NaA146
D3Rik99	RLGS	NDSM206
D3Mit215
D3Rik100	RLGS	NaSM23
D3Rik101	RLGS	NaSM100
D3Rik102	RLGS	NdSM180
D3Rik103	RLGS	NdA132
D3Rik104	RLGS	NdSM215
D3Mit116

RI

• Origin
  SM/J x A/J
• Designation
  SMXA
• Abbreviation 1
  A
• Abbreviation 2
  S

RI Data (columns show RI Lines sampled)

Marker	1	3	4	5	6	7	8	9	10	11	12	14	15	16	17	18	19	20	21	21d	22	23	24	25	26	27	29	30
D3Rik79	A	A	S	S	S	S	A	S	S	S	S	A	A	A	S	S	S	.	A	.	S	A	S	A	S	A	A	S
D3Mit62	A	A	S	S	S	S	A	A	S	S	S	A	A	A	S	A	S	.	A	.	S	A	S	A	S	A	A	S
D3Rik80	A	A	S	S	S	S	A	A	S	S	S	A	A	A	S	A	S	.	A	.	S	A	S	A	S	A	A	S
D3Rik81	A	A	S	S	S	S	A	A	S	S	S	A	A	A	S	A	S	.	A	.	S	A	S	A	S	A	A	S
D3Rik82	A	A	S	S	S	S	A	A	S	S	S	A	A	A	S	A	S	.	A	.	S	A	S	A	S	A	A	S
D3Rik83	A	A	S	S	S	S	A	A	S	S	S	A	A	A	S	A	S	.	A	.	S	A	S	A	S	A	A	S
D3Rik84	A	A	A	S	S	S	A	A	S	S	S	A	A	S	S	A	S	.	A	.	S	S	S	A	S	A	A	S
D3Rik85	A	A	A	S	S	S	A	A	S	S	S	A	A	S	S	A	S	.	A	.	S	S	S	A	S	A	A	S
D3Rik86	.	A	A	S	S	S	A	A	S	S	S	A	A	S	S	A	S	.	A	.	S	S	S	A	S	A	A	S
D3Rik87	A	A	A	S	S	S	S	A	S	S	S	A	A	S	S	A	S	.	A	.	S	S	S	S	S	A	A	S
D3Rik88	A	A	A	S	S	S	S	A	S	S	S	A	A	S	S	A	S	.	A	.	S	S	S	S	S	A	A	S
D3Rik89	A	A	A	S	S	S	S	A	S	S	S	A	A	S	S	A	S	.	A	.	S	S	S	S	A	.	A	S
D3Rik90	A	S	A	S	S	S	S	A	S	S	S	A	A	S	S	A	S	.	A	.	S	S	S	S	A	.	A	S
D3Rik91	A	S	A	S	S	S	S	A	S	S	S	A	A	S	S	A	S	.	A	.	S	S	S	S	A	.	A	S
D3Rik92	A	S	A	S	S	S	S	A	S	S	S	A	A	S	S	A	S	.	A	.	S	S	S	S	S	A	A	S
D3Rik93	A	S	A	S	S	S	A	A	S	S	S	S	A	S	S	A	.	.	A	.	S	S	S	S	S	A	S	S
D3Rik94	S	S	A	S	S	S	A	A	S	A	A	S	S	S	S	A	A	.	A	.	S	S	S	S	S	A	A	S
D3Rik95	S	S	A	S	S	S	A	A	S	A	A	S	S	S	S	A	S	.	A	.	S	S	S	S	S	A	A	S
D3Rik96	S	S	A	S	S	S	A	A	S	S	A	S	S	S	S	A	S	.	A	.	S	S	S	S	S	S	S	S
D3Rik97	S	S	A	S	S	S	A	A	S	S	A	S	S	S	S	A	S	.	A	.	S	S	S	S	S	S	S	S
D3Rik98	S	S	A	S	S	A	A	A	S	A	A	S	S	A	S	A	S	.	A	.	S	S	S	S	S	S	S	S
D3Rik99	S	S	A	S	S	A	A	.	S	.	A	S	S	.	S	A	S	.	A	.	S	S	S	S	S	S	S	A
D3Mit215	S	S	A	S	S	A	A	A	S	A	A	S	S	A	S	A	S	.	S	.	S	S	S	A	S	S	S	S
D3Rik100	S	S	A	S	S	A	A	A	S	S	A	S	S	A	S	A	S	.	S	.	S	S	S	A	S	S	S	S
D3Rik101	A	S	A	S	A	A	A	A	S	A	S	A	S	A	S	A	A	.	S	.	S	S	S	A	S	A	A	S
D3Rik102	A	S	A	S	A	A	A	A	S	A	S	A	S	A	S	A	A	.	S	.	S	S	S	A	S	A	A	S
D3Rik103	A	S	A	S	A	A	A	A	S	A	S	A	S	A	S	A	A	.	S	.	S	S	S	A	S	A	A	S
D3Rik104	A	A	A	S	A	A	A	A	S	A	S	A	S	A	A	S	A	.	S	.	S	S	S	A	A	A	A	S
D3Mit116	A	S	A	S	A	A	A	A	S	A	S	A	A	A	A	S	A	.	S	.	S	A	A	S	A	S	A	S

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D3Rik79	D3Mit62	2	26	2.174	1.670
D3Mit62	D3Rik80	0	26	0.000	0.000
D3Rik80	D3Rik81	0	26	0.000	0.000
D3Rik81	D3Rik82	0	26	0.000	0.000
D3Rik82	D3Rik83	0	26	0.000	0.000
D3Rik83	D3Rik84	3	26	3.488	2.291
D3Rik84	D3Rik85	0	26	0.000	0.000
D3Rik85	D3Rik86	0	25	0.000	0.000
D3Rik86	D3Rik87	2	25	2.273	1.752
D3Rik87	D3Rik88	0	26	0.000	0.000
D3Rik88	D3Rik89	1	25	1.064	1.109
D3Rik89	D3Rik90	1	25	1.064	1.109
D3Rik90	D3Rik91	0	25	0.000	0.000
D3Rik91	D3Rik92	1	25	1.064	1.109
D3Rik92	D3Rik93	3	25	3.659	2.416
D3Rik93	D3Rik94	5	25	7.143	4.082
D3Rik94	D3Rik95	1	26	1.020	1.062
D3Rik95	D3Rik96	3	26	3.488	2.291
D3Rik96	D3Rik97	0	26	0.000	0.000
D3Rik97	D3Rik98	3	26	3.488	2.291
D3Rik98	D3Rik99	1	23	1.163	1.217
D3Rik99	D3Mit215	3	23	4.054	2.714
D3Mit215	D3Rik100	1	26	1.020	1.062
D3Rik100	D3Rik101	8	26	14.286	7.805
D3Rik101	D3Rik102	0	26	0.000	0.000
D3Rik102	D3Rik103	0	26	0.000	0.000
D3Rik103	D3Rik104	4	26	5.000	2.990
D3Rik104	D3Mit116	6	26	8.824	4.832