Mapping Data

Experiment

• Experiment
  RI
• Chromosome
  5
• Reference
  J:49605 Mori M, et al., Genetic profile of the SMXA recombinant inbred mouse strains revealed with restriction landmark genomic scanning. Mamm Genome. 1998 Sep;9(9):695-709
• ID
  MGI:1352401

Genes

Gene	Assay Type	Description
D5Rik136	RLGS	NaA12
D5Rik137	RLGS	NaSM133
D5Rik138	RLGS	NaSM152
D5Rik139	RLGS	NaA181
D5Rik140	RLGS	NdA179
D5Rik141	RLGS	NdSM257
D5Mit349
D5Rik142	RLGS	NaSM103
D5Rik143	RLGS	NaA109
D5Rik144	RLGS	NaSM76
D5Rik145	RLGS	NaA115
D5Rik146	RLGS	NaSM127
D5Rik147	RLGS	NaSM171
D5Rik148	RLGS	NaA197
D5Rik149	RLGS	NaSM138
D5Rik150	RLGS	NaA169
D5Rik151	RLGS	NdA130
D5Rik152	RLGS	NdA31
D5Rik153	RLGS	NdSM49
D5Rik154	RLGS	NdSM281
D5Rik155	RLGS	NaA59
D5Rik156	RLGS	NdSM157
D5Rik157	RLGS	NaA130
D5Rik158	RLGS	NdSM207
D5Rik159	RLGS	NdSM222
D5Rik160	RLGS	NdA150
D5Rik161	RLGS	NdSM110
D5Rik162	RLGS	NaA8
D5Rik163	RLGS	NdA199
D5Rik164	RLGS	NaSM83
D5Rik165	RLGS	NaA83
D5Mit244
D5Mit31
D5Rik166	RLGS	NdSM244
D5Rik167	RLGS	NdSM204
D5Rik168	RLGS	NdA181
D5Rik169	RLGS	NdSM39
D5Rik170	RLGS	NaSM12
D5Rik171	RLGS	NaA11
D5Rik172	RLGS	NaSM126
D5Rik173	RLGS	NdSM214
D5Mit122

RI

• Origin
  SM/J x A/J
• Designation
  SMXA
• Abbreviation 1
  A
• Abbreviation 2
  S

RI Data (columns show RI Lines sampled)

Marker	1	3	4	5	6	7	8	9	10	11	12	14	15	16	17	18	19	20	21	21d	22	23	24	25	26	27	29	30
D5Rik136	S	A	S	.	S	S	S	S	A	S	A	S	A	A	S	S	S	.	S	.	S	A	S	A	S	A	S	A
D5Rik137	S	A	S	A	S	S	S	S	A	S	A	S	A	A	S	S	S	.	S	.	S	A	S	A	S	.	S	A
D5Rik138	S	A	S	A	S	S	S	S	A	S	A	S	A	A	S	S	S	.	S	.	S	A	S	A	S	A	A	A
D5Rik139	S	A	S	A	S	S	S	S	A	S	A	S	A	A	S	S	S	.	S	.	S	A	S	A	S	A	A	A
D5Rik140	S	A	S	A	S	S	S	S	A	S	A	S	A	A	S	S	S	.	S	.	S	A	S	A	S	A	A	A
D5Rik141	S	A	A	A	A	S	S	S	A	S	A	S	A	S	S	A	A	.	A	.	S	A	S	A	S	A	A	S
D5Mit349	S	A	A	A	A	A	S	S	A	S	A	S	A	S	A	A	A	.	A	.	S	A	S	A	S	A	S	S
D5Rik142	S	A	A	A	A	A	S	S	A	S	A	S	A	S	A	A	A	.	A	.	S	A	S	A	S	A	S	S
D5Rik143	S	A	A	A	A	A	S	S	A	S	A	S	A	S	A	A	A	.	A	.	S	A	S	A	S	A	S	S
D5Rik144	S	A	S	A	S	S	A	A	A	A	A	S	A	S	A	S	A	.	S	.	S	A	A	S	A	A	A	A
D5Rik145	S	A	S	A	S	S	A	A	A	A	A	S	A	S	A	S	A	.	S	.	S	A	A	S	A	A	A	A
D5Rik146	.	S	S	A	S	S	.	A	.	.	A	.	A	S	A	S	A	.	S	.	S	A	A	S	A	.	A	A
D5Rik147	S	S	S	A	S	S	A	A	S	A	A	S	A	S	A	S	S	.	S	.	S	A	A	S	A	A	S	A
D5Rik148	S	S	S	A	S	S	A	A	S	A	A	S	A	S	A	S	S	.	S	.	S	A	A	S	A	A	S	A
D5Rik149	S	S	S	A	S	S	A	A	S	A	A	S	A	S	A	S	S	.	S	.	S	A	A	S	A	A	S	A
D5Rik150	S	S	S	A	S	S	A	A	S	A	A	S	A	S	A	S	S	.	S	.	S	A	A	S	A	A	S	A
D5Rik151	S	S	S	A	S	S	A	A	S	A	A	S	A	S	A	S	S	.	S	.	S	A	A	S	A	A	S	A
D5Rik152	S	S	S	A	S	S	A	A	S	A	A	S	A	S	A	S	S	.	S	.	S	A	A	S	A	A	S	A
D5Rik153	S	S	S	.	S	S	A	A	S	A	A	S	A	S	A	S	S	.	S	.	S	A	A	S	A	A	S	A
D5Rik154	S	S	S	A	S	S	A	A	S	A	A	S	A	S	A	S	S	.	S	.	S	A	A	S	A	A	S	A
D5Rik155	S	S	S	A	S	S	A	A	A	A	A	S	A	S	A	S	S	.	S	.	S	A	A	S	A	S	S	A
D5Rik156	S	S	S	A	S	S	A	A	A	A	A	S	A	S	A	S	S	.	S	.	S	A	A	S	A	S	S	A
D5Rik157	S	S	A	A	S	S	A	A	A	A	A	S	A	S	A	S	S	.	S	.	S	A	A	S	A	S	S	A
D5Rik158	S	S	A	A	S	S	A	A	A	A	A	S	A	S	A	S	S	.	S	.	S	A	A	S	A	S	S	A
D5Rik159	S	S	A	A	S	S	A	A	A	A	A	S	A	S	A	S	S	.	S	.	S	A	A	S	A	S	S	A
D5Rik160	S	S	A	A	S	S	A	A	A	A	A	S	A	S	A	S	S	.	S	.	S	A	A	S	A	S	S	A
D5Rik161	S	S	A	A	S	S	A	A	A	A	A	S	A	S	A	S	S	.	S	.	S	A	A	S	A	S	S	A
D5Rik162	.	S	.	A	S	S	S	A	S	A	A	S	A	S	A	S	S	.	S	.	S	A	A	A	A	S	S	A
D5Rik163	S	S	A	A	S	S	S	A	S	A	A	S	A	S	A	S	S	.	S	.	S	A	A	A	A	S	S	A
D5Rik164	S	S	A	A	S	S	S	A	S	A	A	S	A	A	A	S	A	.	S	.	S	A	A	A	A	S	S	A
D5Rik165	S	S	A	A	S	S	S	A	S	A	A	S	A	A	A	S	A	.	S	.	S	A	A	A	A	S	S	A
D5Mit244	A	S	A	S	A	S	A	A	A	A	A	S	A	A	S	S	A	.	S	.	S	A	S	A	S	S	S	A
D5Mit31	A	A	A	S	S	S	A	A	A	A	A	A	S	A	A	A	S	.	S	.	S	A	A	S	S	S	S	A
D5Rik166	A	S	A	S	A	S	A	A	A	A	A	A	S	A	A	A	A	.	S	.	S	S	A	S	S	S	S	A
D5Rik167	A	S	A	S	A	S	A	A	A	A	A	A	S	A	A	A	A	.	S	.	S	S	A	S	S	S	S	A
D5Rik168	A	S	A	S	A	S	A	A	A	A	A	A	S	A	A	A	A	.	S	.	S	S	A	S	S	S	S	A
D5Rik169	A	S	A	S	A	S	A	A	A	A	A	A	S	A	A	A	.	.	S	.	S	S	A	S	S	S	S	A
D5Rik170	A	.	A	.	A	S	A	A	A	A	A	A	S	A	A	A	A	.	S	.	S	S	S	S	S	S	S	A
D5Rik171	A	.	A	.	A	S	A	A	A	A	A	A	S	A	A	A	A	.	S	.	S	S	S	S	S	S	S	A
D5Rik172	.	.	A	S	A	S	A	.	A	.	A	.	S	A	A	A	A	.	S	.	S	S	S	S	S	.	S	A
D5Rik173	S	S	A	S	A	S	A	A	A	A	A	A	S	A	A	A	A	.	S	.	S	S	S	.	S	S	S	A
D5Mit122	S	S	A	S	A	S	A	A	A	A	A	A	S	A	A	A	A	.	S	.	S	S	S	A	S	S	S	A

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D5Rik136	D5Rik137	0	24	0.000	0.000
D5Rik137	D5Rik138	1	25	1.064	1.109
D5Rik138	D5Rik139	0	26	0.000	0.000
D5Rik139	D5Rik140	0	26	0.000	0.000
D5Rik140	D5Rik141	7	26	11.290	6.119
D5Rik141	D5Mit349	3	26	3.488	2.291
D5Mit349	D5Rik142	0	26	0.000	0.000
D5Rik142	D5Rik143	0	26	0.000	0.000
D5Rik143	D5Rik144	13	26	50.000	39.223
D5Rik144	D5Rik145	0	26	0.000	0.000
D5Rik145	D5Rik146	1	20	1.351	1.424
D5Rik146	D5Rik147	2	20	2.941	2.321
D5Rik147	D5Rik148	0	26	0.000	0.000
D5Rik148	D5Rik149	0	26	0.000	0.000
D5Rik149	D5Rik150	0	26	0.000	0.000
D5Rik150	D5Rik151	0	26	0.000	0.000
D5Rik151	D5Rik152	0	26	0.000	0.000
D5Rik152	D5Rik153	0	25	0.000	0.000
D5Rik153	D5Rik154	0	25	0.000	0.000
D5Rik154	D5Rik155	2	26	2.174	1.670
D5Rik155	D5Rik156	0	26	0.000	0.000
D5Rik156	D5Rik157	1	26	1.020	1.062
D5Rik157	D5Rik158	0	26	0.000	0.000
D5Rik158	D5Rik159	0	26	0.000	0.000
D5Rik159	D5Rik160	0	26	0.000	0.000
D5Rik160	D5Rik161	0	26	0.000	0.000
D5Rik161	D5Rik162	3	24	3.846	2.557
D5Rik162	D5Rik163	0	24	0.000	0.000
D5Rik163	D5Rik164	2	26	2.174	1.670
D5Rik164	D5Rik165	0	26	0.000	0.000
D5Rik165	D5Mit244	8	26	14.286	7.805
D5Mit244	D5Mit31	9	26	18.000	10.091
D5Mit31	D5Rik166	4	26	5.000	2.990
D5Rik166	D5Rik167	0	26	0.000	0.000
D5Rik167	D5Rik168	0	26	0.000	0.000
D5Rik168	D5Rik169	0	25	0.000	0.000
D5Rik169	D5Rik170	1	23	1.163	1.217
D5Rik170	D5Rik171	0	24	0.000	0.000
D5Rik171	D5Rik172	0	19	0.000	0.000
D5Rik172	D5Rik173	0	19	0.000	0.000
D5Rik173	D5Mit122	0	25	0.000	0.000