Mapping Data

Experiment

• Experiment
  TEXT-Physical Mapping
• Chromosome
  13
• Reference
  J:64163 Growney JD, et al., High-resolution genetic and physical map of the Lgn1 interval in C57BL/6J implicates Naip2 or Naip5 in Legionella pneumophila pathogenesis. Genome Res. 2000 Aug;10(8):1158-71
• ID
  MGI:1890183

Genes

Gene	Assay Type
D13Die38	overlapping clones
D13Die39	overlapping clones
D13Die40	overlapping clones
D13Die41	overlapping clones
Bdp1	overlapping clones
D13Die6	overlapping clones
Serf1	overlapping clones
Smn1	overlapping clones
D13Die31a	overlapping clones
D13Die26	overlapping clones
D13Die37	overlapping clones
Naip2	overlapping clones
D13Die24	overlapping clones
D13Die23	overlapping clones
D13Die27	overlapping clones
D13Die31c	overlapping clones
D13Die35b	overlapping clones
D13Die25b	overlapping clones
Naip5	overlapping clones
D13Die7b	overlapping clones
D13Die36a	overlapping clones
Naip3-ps3	overlapping clones
D13Die30c	overlapping clones
D13Die32	overlapping clones
D13Die33	overlapping clones
D13Die35a	overlapping clones
D13Die25d	overlapping clones
Naip6	overlapping clones
D13Die7a	overlapping clones
D13Die36b	overlapping clones
D13Die31b	overlapping clones
Naip3	overlapping clones
D13Die31d	overlapping clones
Naip1	overlapping clones
D13Die3	overlapping clones
Gtf2h2	overlapping clones
Ocln	overlapping clones
D13Die42	overlapping clones
D13Die43	overlapping clones
D13Die44	overlapping clones
D13Die45	overlapping clones
D13Die46	overlapping clones
179k6Sp6
20l12T7
224a14T7
286d6Sp6
D13Die30.2

Notes

• Experiment
  Authors constructed a physical map of the Lgn1 region in the C57BL/6J haplotype and determined the size of the Birc1 array to be 313kb in C57BL/6J as compared to 471kb in the 129 lineage which contains two additional 79kb repeats. The order and orientation of the markers in C57BL/6J was determined to be: centromere - D13Die38 - D13Die39 - D13Die40 - 3' - Bdp1 - D13Die41 - Bdp1 - 5' - 5 - Serf1 - 3' - D13Die6 - 5' - Smn1 - 3' - 3' - Birc1b - D13Die31a - D13Die26 - D13Die37 - D13Die24 - D13Die23 - Birc1b -5' - D13Die27 - 3' - Birc1e - D13Die31c - D13Die35b - D13Die25b - Birc1e - 5' - D13Die7b - D13Die36a - 3' - Birc1c-ps3 - D13Die31b - Birc1c-ps3 - 5' - D13Die30c - 3' - Birc1f - D13Die32 - D13Die33 - D13Die35a - D13Die25d - Birc1f - 5' - D13Die7a - 3' - Birc1c - D13Die36b - D13Die31b - Birc1c - 5' - 3' - Birc1a - D13Die31d - D13Die3 - Birc1a - 5' - 3' - Gtf2h2 - Ocln - D13Die42 - D13Die43 - D13Die44 - D13Die45 - D13Die46 - telomere.
  
  286d6Sp6 - 20l12T7 - 224a14T7 - 286d6Sp6 -D13Die30.2 also mapped within this region