Mapping Data

Experiment

• Experiment
  TEXT-Physical Mapping
• Chromosome
  18
• Reference
  J:67989 Wu Q, et al., Comparative dna sequence analysis of mouse and human protocadherin gene clusters. Genome Res. 2001 Mar;11(3):389-404
• ID
  MGI:2137909

Genes

Gene	Assay Type	Description
Slc25a2	overlapping clones, direct sequencing	56b11, 19k11
Taf7	overlapping clones, direct sequencing	56b11, 19k11
Pcdhga1	overlapping clones, direct sequencing	56b11, 19k11
Pcdhga2	overlapping clones, direct sequencing	56b11, 19k11
Pcdhga3	overlapping clones, direct sequencing	56b11, 19k11
Pcdhgb1	overlapping clones, direct sequencing	56b11, 19k11
Pcdhga4	overlapping clones, direct sequencing	56b11, 19k11
Pcdhgb2	overlapping clones, direct sequencing	56b11, 19k11
Pcdhga5	overlapping clones, direct sequencing	56b11, 19k11
Pcdhga6	overlapping clones, direct sequencing	56b11, 19k11
Pcdhga7	overlapping clones, direct sequencing	56b11, 19k11
Pcdhgb4	overlapping clones, direct sequencing	56b11, 19k11
Pcdhga8	overlapping clones, direct sequencing	56b11, 19k11
Pcdhgb5	overlapping clones, direct sequencing	56b11, 19k11
Pcdhga9	overlapping clones, direct sequencing	56b11, 19k11
Pcdhgb6	overlapping clones, direct sequencing	56b11, 19k11
Pcdhga10	overlapping clones, direct sequencing	56b11, 19k11
Pcdhgb7	overlapping clones, direct sequencing	56b11, 19k11
Pcdhga11	overlapping clones, direct sequencing	56b11, 19k11
Pcdhgb8	overlapping clones, direct sequencing	56b11, 19k11
Pcdhga12	overlapping clones, direct sequencing	56b11, 19k11
Pcdhgc3	overlapping clones, direct sequencing	56b11, 19k11
Pcdhgc4	overlapping clones, direct sequencing	56b11, 19k11
Pcdhgc5	overlapping clones, direct sequencing	56b11, 19k11

Notes

• Experiment
  The authors sequenced seven overlapping clones that formed a tiling path across the protocadherin gene cluster on mouse Chromosome 18. Sequence analysis revealed that the Pcdh-gamma gene cluster was organized into 22 variable exons and three small constant region exons downstream of the Pcdh-beta cluster. Each variable region exon was independently spliced to the first constant region exon. The order of markers/variable exons was determined to be: Ornt2 - Taf7 - Pcdhga1 - Pcdhga2 - Pcdhga3 - Pcdhgb1 - Pcdhga4 - Pcdhgb2 - Pcdhga5 - Pcdhga6 - Pcdhga7 - Pcdhgb4 - Pcdhga8 - Pcdhgb5 - Pcdhga9 - Pcdhgb6 - Pcdhga10 - Pcdhgb7 - Pcdhga11 - Pcdhgb8 - Pcdhga12 - Pcdhgc3 - Pcdhga4 - Pcdhga5 - constant region exon 1 - constant region exon 2 - constant region exon 3.