Mapping Data

Experiment

• Experiment
  TEXT-QTL
• Chromosome
  9
• Reference
  J:109029 Mulligan MK, et al., Toward understanding the genetics of alcohol drinking through transcriptome meta-analysis. Proc Natl Acad Sci U S A. 2006 Apr 18;103(16):6368-73
• ID
  MGI:3639673

Genes

Gene	Assay Type
Etohc3	reported elsewhere
Pknox2
Scn4b
Clmp
Cfap68
Arhgef12
Carm1
Cryab
Cox5a
Dlat
Fxyd6
Limd1
Nicn1
Nmnat3
Rbp1
Sc5d
Tcf12
Vps11
Scaper
Acad11

Notes

• Experiment
  Candidate genes for alcohol consumption loci were screened using microarray analysis. A panel of 107 microarrays were screened using mRNA from 3 inbred strains and 6 coisogenic strains with known differences in alcohol consumption. A large set of identified genes were further refined by analyzing mRNA from a congenic line carrying DBA/2J-derived DNA from 9 cM - 58 cM on a C57BL/6J genetic background.
  
  Candidate genes Pknox2, Scn4b, 9030425E11Rik, and 111003A03Rik coincide with Etohc3, an alcohol consumption QTL at 29 cM (chr9).
  
  Other candidate genes in the chromosome 9 congenic interval identified by microarray analysis included Arhgef12, Acad11 (formerly 5730439E10Rik) Carm1, Cryab, Cox5a, Dlat, Fxyd6, Limd1, Nicn1, Nmnat3, Rbp1, Sc5d, Tcf12, Vps11, and Zfp291.