Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  5
• Reference
  J:496 Koizumi T, et al., Linkage, but not gene order, of homologous loci, including alpha-L-iduronidase (Idua), is conserved in the Huntington disease region of the mouse and human genomes. Mamm Genome. 1992;3(1):23-7
• ID
  MGI:40615

Genes

Gene	Assay Type	Description
Ctbp1	Southern analysis	IT-3C
D5H4S62	Southern analysis	p8
Qdpr	Southern analysis	DHPR.9
Idua	Southern analysis	pID89
Kit	Southern analysis	1kb HindIII
D5Mnl25e	Southern analysis	pMnl25

Notes

• Experiment
  Kit and D5Mnl25 are within 1cM of each other and were considered as a single locus for this analysis. Of the 106 mice reported, 45 were reported previously in Cheng et al 1989, Genomics 4:419 for some loci. D5H4S62 and Qdpr were not typed in 49 of the parental class offspring.Offspring types indicate alleles inherited from F1 parent.
  

CROSS

• Type
  Backcross, female
• Female Parent
  <b> <b> <b> <b> <b> <b>/<s> <s> <s> <s> <s> <s>
• Strain
  (C57BL/6J x M. spretus)F1
• Male Parent
  <b> <b> <b> <b> <b> <b>/<b> <b> <b> <b> <b> <b>
• Strain
  C57BL/6J
• Allele 1
  b from C57BL/6J
• Allele 2
  s from M. spretus

CROSS Data

MC #mice	Ctbp1	D5H4S62	Qdpr	Idua	Kit	D5Mnl25e
35	s	s	s	s	s	s
49	b	b	b	b	b	b
1	s	b	b	b	b	b
0	b	s	s	s	s	s
5	s	s	b	b	b	b
3	b	b	s	s	s	s
2	s	s	s	b	b	b
7	b	b	b	s	s	s
3	s	s	s	s	b	b
1	b	b	b	b	s	s

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Ctbp1	D5H4S62	1	106	0.943	0.939
D5H4S62	Qdpr	8	106	7.547	2.566
Qdpr	Idua	9	106	8.491	2.707
Idua	Kit	4	106	3.774	1.851
Kit	D5Mnl25e	0	106	0.000	0.000