Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  18
• Reference
  J:1700 Johnson KR, et al., A multipoint genetic linkage map of mouse chromosome 18. Genomics. 1992 Aug;13(4):1143-9
• ID
  MGI:40790

Genes

Gene	Assay Type	Description
Pgk1-rs5	Southern analysis	pHPGK-7e
Tpi-rs10	Southern analysis	pMurTPI
Egr1	Southern analysis	pRSV3.1
Hmgn2-rs9	Southern analysis	pM17c
Fgf1	Southern analysis	pDH15
Nr3c1	Southern analysis	pSV2WREC
Cdx1	Southern analysis	pBH8
Csf1r	Southern analysis	pcfms104
Pdgfrb	Southern analysis	pRP41
Pde6a	Southern analysis	p13
Rps14	Southern analysis	pCS14-1
Adrb2	Southern analysis	pTF3
Mbp	Southern analysis	pHBP-1

Notes

• Reference
  Revised gene symbol: Tpi-rs10 (formerly Tpi-10).
• Experiment
  Offspring types indicate alleles inherited from F1 parent.
  

CROSS

• Type
  Backcross, female
• Female Parent
  <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>/<s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s>
• Strain
  (C57BL/6J x SPRET/Ei)F1
• Male Parent
  <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s>/<s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s>
• Strain
  SPRET/EiJ
• Mapping Panel
  JAX Mouse Mutant Resource BSS
• Allele 1
  s from SPRET/EiJ
• Allele 2
  b from C57BL/6J

CROSS Data

MC #mice	Pgk1-rs5	Tpi-rs10	Egr1	Hmgn2-rs9	Fgf1	Nr3c1	Cdx1	Csf1r	Pdgfrb	Pde6a	Rps14	Adrb2	Mbp
32	b	b	b	b	b	b	b	b	b	b	b	b	b
30	s	s	s	s	s	s	s	s	s	s	s	s	s
3	b	s	s	s	s	s	s	s	s	s	s	s	s
3	s	b	b	b	b	b	b	b	b	b	b	b	b
8	b	b	s	s	s	s	s	s	s	s	s	s	s
7	s	s	b	b	b	b	b	b	b	b	b	b	b
2	b	b	b	b	s	s	s	s	s	s	s	s	s
1	s	s	s	s	b	b	b	b	b	b	b	b	b
0	b	b	b	b	b	s	s	s	s	s	s	s	s
3	s	s	s	s	s	b	b	b	b	b	b	b	b
7	b	b	b	b	b	b	s	s	s	s	s	s	s
6	s	s	s	s	s	s	b	b	b	b	b	b	b
1	b	b	b	b	b	b	b	b	b	b	b	s	s
1	s	s	s	s	s	s	s	s	s	s	s	b	b
21	b	b	b	b	b	b	b	b	b	b	b	b	s
11	s	s	s	s	s	s	s	s	s	s	s	s	b

Additional Mice Typed Only for Specific Pairs of Loci

Marker 1	Marker 2	# Recombinants	# Parentals
Pgk1-rs5	Tpi-rs10	0	4
Tpi-rs10	Hmgn2-rs9	1	7
Egr1	Hmgn2-rs9	0	4
Egr1	Fgf1	0	4
Fgf1	Nr3c1	0	3
Nr3c1	Pde6a	1	2
Pde6a	Rps14	0	8
Pdgfrb	Rps14	0	8
Cdx1	Pdgfrb	0	4
Cdx1	Csf1r	0	4
Csf1r	Adrb2	1	4
Adrb2	Mbp	0	4

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Pgk1-rs5	Tpi-rs10	6	140	4.286	1.712
Tpi-rs10	Egr1	15	136	11.029	2.686
Egr1	Hmgn2-rs9	0	140	0.000	0.000
Hmgn2-rs9	Fgf1	3	136	2.206	1.259
Fgf1	Nr3c1	3	139	2.158	1.233
Nr3c1	Cdx1	13	136	9.559	2.521
Cdx1	Csf1r	0	140	0.000	0.000
Csf1r	Pdgfrb	0	136	0.000	0.000
Pdgfrb	Pde6a	0	136	0.000	0.000
Pde6a	Rps14	0	144	0.000	0.000
Rps14	Adrb2	2	136	1.471	1.032
Adrb2	Mbp	32	140	22.857	3.549