Mapping Data

Experiment

• Experiment
  RI
• Chromosome
  1
• Reference
  J:12786 Malo D, et al., High-resolution linkage map in the vicinity of the host resistance locus Bcg. Genomics. 1993 Jun;16(3):655-63
• ID
  MGI:43536

Genes

Gene	Allele	Assay Type
D1Mcg1		PCR amplified length variant
Tnp1		reported elsewhere
D1Mcg2		PCR amplified length variant
D1Mcg3		PCR amplified length variant
D1Mcg4		PCR amplified length variant
Vil1		visible phenotype
Slc11a1	Slc11a1^s	reported elsewhere
D1Mcg6		PCR amplified length variant
D1Mit7		PCR amplified length variant
Des		reported elsewhere
D1Mcg8		PCR amplified length variant
Inha		reported elsewhere

Notes

• Reference
  Authors use Lsh for Nramp1, Lsh is an allele of Nramp1.

RI

• Origin
  C57BL/6J x C3H/HeJ
• Designation
  BXH
• Abbreviation 1
  B
• Abbreviation 2
  H

RI Data (columns show RI Lines sampled)

Marker	2	3	4	6	7	8	9	10	11	12	14	19
D1Mcg1	B	B	H	H	H	B	H	H	B	B	H	H
Tnp1	H	B	H	H	H	B	H	B	B	B	H	H
D1Mcg2	H	B	H	H	H	H	H	B	B	B	H	H
D1Mcg3	H	B	H	H	H	H	H	B	B	B	H	H
D1Mcg4	H	B	H	H	H	H	H	B	B	.	H	H
Slc11a1	H	B	H	H	H	H	H	B	B	B	H	H
D1Mcg6	H	B	H	H	H	H	H	B	B	B	H	H
D1Mit7	H	B	H	H	H	H	H	B	B	B	H	H
D1Mcg8	B	B	H	H	H	H	H	B	B	B	H	H

2x2 Data

Marker 1	Marker 2	Discordant	Strains	RI Sets
D1Mcg2	D1Mcg3	0	24	BXH
D1Mcg3	Vil1	0	24	BXH
Vil1	D1Mcg6	0	24	Bxh
Des	Inha	0	24	BXH

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D1Mcg1	Tnp1	2	12	5.556	4.781
Tnp1	D1Mcg2	1	12	2.381	2.605
D1Mcg2	D1Mcg3	0	12	0.000	0.000
D1Mcg3	D1Mcg4	0	11	0.000	0.000
D1Mcg4	Slc11a1	0	11	0.000	0.000
Slc11a1	D1Mcg6	0	12	0.000	0.000
D1Mcg6	D1Mit7	0	12	0.000	0.000
D1Mit7	D1Mcg8	1	12	2.381	2.605