Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  1
• Reference
  J:12786 Malo D, et al., High-resolution linkage map in the vicinity of the host resistance locus Bcg. Genomics. 1993 Jun;16(3):655-63
• ID
  MGI:43539

Genes

Gene	Allele	Assay Type
Fn1		reported elsewhere
Tnp1		reported elsewhere
D1Mcg2		PCR amplified length variant
D1Mcg105		Southern analysis
D1Mcg3		PCR amplified length variant
Vil1		reported elsewhere
Slc11a1	Slc11a1^s	reported elsewhere
D1Mcg6		PCR amplified length variant
D1Mcg136		Southern analysis
Des		reported elsewhere
Inha		reported elsewhere

Notes

• Reference
  Authors use Lsh for Nramp1, Lsh is an allele of Nramp1.
• Experiment
  Offspring types indicate alleles inherited from F1 parent.
  

CROSS

• Type
  Backcross, sexes unspecified or combined
• Female Parent
  <a> <a> <a> <a> <a> <a> <a> <a> <a> <a>/<b> <b> <b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  (AKR/J x C57BL/6J)F1
• Male Parent
  <b> <b> <b> <b> <b> <b> <b> <b>/<b> <b> <b> <b> <b> <b> <b> <b>
• Strain
  C57BL/6J
• Allele 1
  a from AKR/J
• Allele 2
  b from C57BL/6J

CROSS Data

MC #mice	Tnp1	D1Mcg2	D1Mcg3	Vil1	Slc11a1	D1Mcg6	Des	Inha
43	a	a	a	a	a	a	a	a
52	b	b	b	b	b	b	b	b
1	b	a	a	a	a	a	a	a
0	a	b	b	b	b	b	b	b
0	b	b	b	b	b	b	a	a
1	a	a	a	a	a	a	b	b

Additional Mice Typed Only for Specific Pairs of Loci

Marker 1	Marker 2	# Recombinants	# Parentals
Fn1	Tnp1	3	94
Tnp1	D1Mcg105	1	96
Vil1	D1Mcg136	0	97
D1Mcg136	Des	1	96

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Tnp1	D1Mcg2	1	97	1.031	1.026
D1Mcg2	D1Mcg3	0	97	0.000	0.000
D1Mcg3	Vil1	0	97	0.000	0.000
Vil1	Slc11a1	0	97	0.000	0.000
Slc11a1	D1Mcg6	0	97	0.000	0.000
D1Mcg6	Des	1	97	1.031	1.026
Des	Inha	0	97	0.000	0.000