Mapping Data

Experiment

• Experiment
  RI
• Chromosome
  4
• Reference
  J:21511 Kaushik N, et al., Intracisternal A-type particle elements as genetic markers: detection by repeat element viral element amplified locus-PCR. Mamm Genome. 1994 Nov;5(11):688-95
• ID
  MGI:44346

Genes

Gene	Assay Type	Description
Ifna	reported elsewhere
Slc2a1	reported elsewhere
Nppa	reported elsewhere
Hmgcl	reported elsewhere
Iap3ra9	PCR amplified length variant	JS139, JS134
Iap3rb9	PCR amplified length variant	JS139, JS135
Iap3rc1	PCR amplified length variant	JS139, JS136
Iap3rc4	PCR amplified length variant	JS139, JS136
Iap3rc11	PCR amplified length variant	JS139, JS136
Iap5ra4	PCR amplified length variant	JS140, JS134
Iap5rc10	PCR amplified length variant	JS140, JS136

RI

• Origin
  C57BL/6J x C3H/HeJ
• Designation
  BXH
• Abbreviation 1
  B
• Abbreviation 2
  H

RI Data (columns show RI Lines sampled)

Marker	2	3	4	6	7	8	9	10	11	12	14	19
Iap3ra9	B	B	B	H	B	B	B	H	B	B	B	H
Iap3rb9	B	B	H	H	H	B	H	H	H	B	B	H
Iap3rc1	H	B	H	B	B	B	H	B	H	B	B	H
Iap3rc4	H	B	H	B	B	B	H	B	H	B	B	H
Iap3rc11	B	B	B	H	B	B	B	H	B	B	B	H
Iap5ra4	H	B	H	H	B	B	H	B	H	B	B	H
Iap5rc10	B	B	B	H	B	B	B	H	B	B	B	H

2x2 Data

Marker 1	Marker 2	Discordant	Strains	RI Sets
Iap3ra9	Nppa	0	12	BXH
Iap3rb9	Hmgcl	0	12	BXH
Iap3rc1	Ifna	0	12	BXH
Iap3rc4	Ifna	0	12	BXH
Iap3rc11	Nppa	0	12	BXH
Iap5ra4	Slc2a1	0	12	BXH
Iap5rc10	Nppa	0	12	BXH

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Iap3ra9	Iap3rb9	4	12	16.667	13.608
Iap3rb9	Iap3rc1	4	12	16.667	13.608
Iap3rc1	Iap3rc4	0	12	0.000	0.000
Iap3rc4	Iap3rc11	6	12	50.000	57.735
Iap3rc11	Iap5ra4	5	12	27.778	25.301
Iap5ra4	Iap5rc10	5	12	27.778	25.301