Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  5
• Reference
  J:21105 Beckers MC, et al., A high-resolution genetic map of mouse chromosome 5 encompassing the reeler (rl) locus. Genomics. 1994 Oct;23(3):685-90
• ID
  MGI:44451

Genes

Gene	Allele	Assay Type	Description
Hgf		Southern analysis	Hgf cDNA6
Cacna2d1		Southern analysis	Cchl2a cDNA1
D5Mit1		PCR amplified length variant
D5Nam1		SSCP	D5Nam1-pA, D5Nam1-pB
D5Nam2		Southern analysis	D5Nam2 probe1
Reln	Reln^rl	visible phenotype
D5Mit61		PCR amplified length variant
D5Mit72		PCR amplified length variant
Xmv45		Southern analysis	Xmv45 genomic1
Htr5a		Southern analysis	Htr5a cDNA2
Dpp6		Southern analysis	Peplb cDNA1
D5Nam3		Southern analysis	D5Nam3 probe1
D5Mit66		PCR amplified length variant

Notes

• Experiment
  F1 progenitor B6CSEG is a recombinant congenic whose centromeric Chromosome 5 is homozygous for M. spretus (SEG). The markers D5Nam1, D5Nam2, D5Mit1 and Peplb were typed only in mice recombinant between Hgf and D6Mit66.Offspring types indicate alleles inherited from F1 parent.
  

CROSS

• Type
  Backcross, female
• Female Parent
  <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>/<s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s>
• Strain
  (BALB/c x B6CSEG)F1
• Male Parent
  <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>/<c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>
• Strain
  BALB/c
• Allele 1
  c from BALB/c
• Allele 2
  s from B6cSEG

CROSS Data

MC #mice	Hgf	Cacna2d1	D5Mit1	D5Nam1	D5Nam2	Reln	D5Mit61	D5Mit72	Xmv45	Htr5a	Dpp6	D5Nam3	D5Mit66
61	c	c	c	c	c	c	c	c	c	c	c	c	c
61	s	s	s	s	s	s	s	s	s	s	s	s	s
0	s	s	c	c	c	c	c	c	c	c	c	c	c
0	c	c	s	s	s	s	s	s	s	s	s	s	s
1	s	s	s	c	c	c	c	c	c	c	c	c	c
2	c	c	c	s	s	s	s	s	s	s	s	s	s
0	s	s	s	s	s	c	c	c	c	c	c	c	c
0	c	c	c	c	c	s	s	s	s	s	s	s	s
1	s	s	s	s	s	s	s	s	c	c	c	c	c
1	c	c	c	c	c	c	c	c	s	s	s	s	s
1	s	s	s	s	s	s	s	s	s	c	c	c	c
1	c	c	c	c	c	c	c	c	c	s	s	s	s
2	s	s	s	s	s	s	s	s	s	s	s	c	c
2	c	c	c	c	c	c	c	c	c	c	c	s	s
0	s	s	s	s	s	s	s	s	s	s	s	s	c
0	c	c	c	c	c	c	c	c	c	c	c	c	s

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Hgf	Cacna2d1	0	133	0.000	0.000
Cacna2d1	D5Mit1	0	133	0.000	0.000
D5Mit1	D5Nam1	3	133	2.256	1.288
D5Nam1	D5Nam2	0	133	0.000	0.000
D5Nam2	Reln	0	133	0.000	0.000
Reln	D5Mit61	0	133	0.000	0.000
D5Mit61	D5Mit72	0	133	0.000	0.000
D5Mit72	Xmv45	2	133	1.504	1.055
Xmv45	Htr5a	2	133	1.504	1.055
Htr5a	Dpp6	0	133	0.000	0.000
Dpp6	D5Nam3	4	133	3.008	1.481
D5Nam3	D5Mit66	0	133	0.000	0.000