Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  2
• Reference
  J:22446 Pavan WJ, et al., A high-resolution linkage map of the lethal spotting locus: a mouse model for Hirschsprung disease. Mamm Genome. 1995 Jan;6(1):1-7
• ID
  MGI:44703

Genes

Gene	Assay Type	Description
a	visible phenotype
D2Mit52	PCR amplified length variant
D2Mit145	PCR amplified length variant
D2Mit25	PCR amplified length variant
D2Mit147	PCR amplified length variant
D2Mit73	PCR amplified length variant
D2Mit114	PCR amplified length variant
D2Mit148	PCR amplified length variant
D2Mit174	PCR amplified length variant
D2Mit199	PCR amplified length variant
D2Mit210	PCR amplified length variant
D2Mit213	PCR amplified length variant
D2Mit265	PCR amplified length variant
D2Mit345	PCR amplified length variant
D2Mit346	PCR amplified length variant
Edn3	SSCP	Edn3-pA1, Edn3-pB1
D2Mit200	PCR amplified length variant
D2Mit266	PCR amplified length variant

Notes

• Reference
  The loci mapped in this reference are ordered by a composite of 3 reported crosses. For each cross the loci are ordered as reported for the cross, and may differ from the composite. ls is an allele of Edn3.
• Experiment
  Only ls/+ and ls/ls progeny typed in this cross. Only offspring showing a recombination between D2Mit25 and D2Mit200 were tested for D2Mit73, D2Mit114, D2Mit147, D2Mit148, D2Mit174, D2Mit199, D2Mit210, D2Mit213, D2Mit265, D2Mit345, D2Mit346 and Edn3.Offspring types indicate alleles inherited from F1 parent.
  

CROSS

• Type
  Backcross, female
• Female Parent
  <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l>/<c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>
• Strain
  (LS/Le x CAST/Ei)F1
• Male Parent
  <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l>/<l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l> <l>
• Strain
  LS/LeJ
• Allele 1
  l from LS/LeJ
• Allele 2
  c from CAST/EiJ

CROSS Data

MC #mice	a	D2Mit52	D2Mit145	D2Mit25	D2Mit147	D2Mit73	D2Mit114	D2Mit148	D2Mit174	D2Mit199	D2Mit210	D2Mit213	D2Mit265	D2Mit345	D2Mit346	Edn3	D2Mit200	D2Mit266
35	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c
37	l	l	l	l	l	l	l	l	l	l	l	l	l	l	l	l	l	l
5	l	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c
3	c	l	l	l	l	l	l	l	l	l	l	l	l	l	l	l	l	l
1	l	l	l	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c
4	c	c	c	l	l	l	l	l	l	l	l	l	l	l	l	l	l	l
0	l	l	l	l	c	c	c	c	c	c	c	c	c	c	c	c	c	c
1	c	c	c	c	l	l	l	l	l	l	l	l	l	l	l	l	l	l
1	l	l	l	l	l	c	c	c	c	c	c	c	c	c	c	c	c	c
2	c	c	c	c	c	l	l	l	l	l	l	l	l	l	l	l	l	l
1	l	l	l	l	l	l	l	l	l	l	l	l	l	l	l	l	c	c
0	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	l	l
1	l	l	l	l	l	l	l	l	l	l	l	l	l	l	l	l	l	c
1	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c	l

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
a	D2Mit52	8	92	8.696	2.938
D2Mit52	D2Mit145	0	92	0.000	0.000
D2Mit145	D2Mit25	5	92	5.435	2.364
D2Mit25	D2Mit147	1	92	1.087	1.081
D2Mit147	D2Mit73	3	92	3.261	1.852
D2Mit73	D2Mit114	0	92	0.000	0.000
D2Mit114	D2Mit148	0	92	0.000	0.000
D2Mit148	D2Mit174	0	92	0.000	0.000
D2Mit174	D2Mit199	0	92	0.000	0.000
D2Mit199	D2Mit210	0	92	0.000	0.000
D2Mit210	D2Mit213	0	92	0.000	0.000
D2Mit213	D2Mit265	0	92	0.000	0.000
D2Mit265	D2Mit345	0	92	0.000	0.000
D2Mit345	D2Mit346	0	92	0.000	0.000
D2Mit346	Edn3	0	92	0.000	0.000
Edn3	D2Mit200	1	92	1.087	1.081
D2Mit200	D2Mit266	2	92	2.174	1.520