Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  8
• Reference
  J:27727 Filie JD, et al., Genetic mapping of the alpha-1 and alpha-2 (IV) collagen genes to mouse Chromosome 8. Mamm Genome. 1995 Jul;6(7):487
• ID
  MGI:45457

Genes

Gene	Assay Type	Description
Fcer2a	reported elsewhere
Pcp2	reported elsewhere
Col4a1	Southern analysis	Col4a1 probe1
Col4a2	Southern analysis	Col4a1 probe1
Plat	reported elsewhere
Polb	reported elsewhere
Slc20a2	reported elsewhere

Notes

• Experiment
  The authors indicate that Col4a1 and Col4a2 are separated by 130 bp and arranged in a head-to-head formation. Therefore, by using a probe isolated from the Col4a1 enhancer region located between the two genes, they are able to map both Col4a1 and Col4a2to the same position on Chromosome 8.

CROSS

• Type
  Backcross, female
• Female Parent
  <n> <n> <n> <n> <n> <n> <n>/<s> <s> <s> <s> <s> <s> <s>
• Strain
  (NFS/N x M. spretus)F1
• Male Parent
  <s> <s> <s> <s> <s> <s> <s>/<s> <s> <s> <s> <s> <s> <s>
• Strain
  M. spretus or C58/J
• Mapping Panel
  Kozak FvC58 + FvSpr
• Allele 1
  n from NFS/N
• Allele 2
  s from M. spretus

2x2 Data Reported

Marker 1	Marker 2	# Recombinants	# Parentals
Fcer2a	Pcp2	1	106
Pcp2	Col4a1	4	100
Pcp2	Col4a2	4	100
Col4a1	Plat	3	91
Col4a1	Polb	3	91
Col4a1	Slc20a2	3	91
Col4a2	Plat	3	91
Col4a2	Polb	3	91
Col4a2	Slc20a2	3	91

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Fcer2a	Pcp2	1	107	0.935	0.930
Pcp2	Col4a1	4	104	3.846	1.886
Pcp2	Col4a2	4	104	3.846	1.886
Col4a1	Plat	3	94	3.191	1.813
Col4a1	Polb	3	94	3.191	1.813
Col4a1	Slc20a2	3	94	3.191	1.813
Col4a2	Plat	3	94	3.191	1.813
Col4a2	Polb	3	94	3.191	1.813
Col4a2	Slc20a2	3	94	3.191	1.813