Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  1
• Reference
  J:29379 Mullick A, et al., Nhlh1, a basic helix-loop-helix transcription factor, is very tightly linked to the mouse looptail (Lp) mutation. Mamm Genome. 1995 Oct;6(10):700-4
• ID
  MGI:45742

Genes

Gene	Assay Type	Description
D1Mit113	PCR amplified length variant	MPC1150
Nhlh1	Southern analysis	Nhlh1 genomic3
Apoa2	reported elsewhere
Fcer1g	reported elsewhere
Vangl2	visible phenotype
Fcer1a	reported elsewhere
D1Mit149	PCR amplified length variant	D703
Spta1	reported elsewhere

Notes

• Reference
  Authors use Mpp and Hlx1 for locus symbols Mpz and Hlx respectively.

CROSS

• Type
  Backcross, sexes unspecified or combined
• Female Parent
  <l> <l> <l> <l> <l> <l> <l> <l>/<s> <s> <s> <s> <s> <s> <s> <s>
• Strain
  (LPT/Le Vangl2/+ x SWR/J)F1
• Male Parent
  <s> <s> <s> <s> <s> <s> <s> <s>/<s> <s> <s> <s> <s> <s> <s> <s>
• Strain
  SWR/J
• Allele 1
  l from LPT/LeJ
• Allele 2
  s from SWR/J

2x2 Data Reported

Marker 1	Marker 2	# Recombinants	# Parentals
D1Mit113	Nhlh1	2	498
Apoa2	Nhlh1	2	498
Fcer1g	Nhlh1	2	498
D1Mit113	Vangl2	2	498
Apoa2	Vangl2	2	498
Fcer1g	Vangl2	2	498
Nhlh1	Vangl2	0	500
Nhlh1	Fcer1a	1	499
Nhlh1	D1Mit149	1	499
Nhlh1	Spta1	1	499
Vangl2	Fcer1a	1	499
Vangl2	D1Mit149	1	499
Vangl2	Spta1	1	499

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Apoa2	Vangl2	2	500	0.400	0.282
Apoa2	Nhlh1	2	500	0.400	0.282
D1Mit113	Vangl2	2	500	0.400	0.282
D1Mit113	Nhlh1	2	500	0.400	0.282
Fcer1g	Vangl2	2	500	0.400	0.282
Fcer1g	Nhlh1	2	500	0.400	0.282
Vangl2	D1Mit149	1	500	0.200	0.200
Vangl2	Fcer1a	1	500	0.200	0.200
Vangl2	Spta1	1	500	0.200	0.200
Nhlh1	D1Mit149	1	500	0.200	0.200
Nhlh1	Fcer1a	1	500	0.200	0.200
Nhlh1	Vangl2	0	500	0.000	0.000
Nhlh1	Spta1	1	500	0.200	0.200