Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  2
• Reference
  J:11577 Walther C, et al., Pax: a murine multigene family of paired box-containing genes. Genomics. 1991 Oct;11(2):424-34
• ID
  MGI:46103

Genes

Gene	Assay Type	Description
Surf	Southern analysis	gHN3pbx
Hoxd	reported elsewhere
Pax6	Southern analysis	gH2pbx
Pax1	Southern analysis	cHinc/Sac
a	reported elsewhere

Notes

• Reference
  Authors use Hox-4, Hox-1.4 and c-jun for locus symbols Hoxd, Hoxa4 and Jun respectively. Summary haplotype data indicates 3 recombinants between Pax3 and Ctla4 whereas Table 2 indicates 5 recombinants between these two loci. Summary haplotype data indicates 1 recombinant between Pax5 and Etl2 whereas Table 2 indicates 2 recombinants between these two loci.
• Experiment
  Offspring types indicate alleles inherited from F1 parent.
  

CROSS

• Type
  Backcross, female
• Female Parent
  <b> <b> <b> <b> <b>/<s> <s> <s> <s> <s>
• Strain
  (C57BL/6 x SPE/Pas)F1
• Male Parent
  <b> <b> <b> <b> <b>/<b> <b> <b> <b> <b>
• Strain
  C57BL/6
• Allele 1
  b from C57BL/6
• Allele 2
  s from SPE/Pas

CROSS Data

MC #mice	Surf	Hoxd	Pax6	Pax1	a
5	b	b	b	b	b
6	s	s	s	s	s
3	s	b	b	b	b
3	b	s	s	s	s
0	s	s	b	b	b
1	b	b	s	s	s
1	s	s	s	b	b
5	b	b	b	s	s
0	s	s	s	s	b
1	b	b	b	b	s
0	b	s	s	b	b
1	s	b	b	s	s
3	b	b	b	.	b
2	s	s	s	.	s
4	.	.	b	b	b
3	.	.	s	s	s
0	s	b	.	b	b
1	b	s	.	s	s
5	s	s	s	.	b
1	b	b	b	.	s
1	b	.	b	b	b
0	s	.	s	s	s
1	.	s	s	b	b
0	.	b	b	s	s
1	b	s	.	.	b
0	s	b	.	.	s
4	b	b	b	.	.
2	s	s	s	.	.
5	s	s	.	.	s
2	b	b	.	.	b
1	s	.	s	b	b
0	b	.	b	s	s
2	s	b	b	.	b
0	b	s	s	.	s
0	s	s	.	.	b
2	b	b	.	.	s
1	s	.	s	.	b
0	b	.	b	.	s
0	s	.	.	.	b
1	b	.	.	.	s
1	.	.	.	b	b
0	.	.	.	s	s

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
Surf	Hoxd	11	56	19.643	5.309
Hoxd	Pax6	1	46	2.174	2.150
Pax6	Pax1	9	36	25.000	7.217
Pax1	a	1	38	2.632	2.597