Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  11
• Reference
  J:31803 Baldacci PA, et al., A high-resolution map around the locus Om on mouse Chromosome 11. Mamm Genome. 1996 Feb;7(2):114-6
• ID
  MGI:46275

Genes

Gene	Assay Type	Description
D11Mit34	PCR amplified length variant	A1113
D11Mit94	PCR amplified length variant	MPC165
D11Mit96	PCR amplified length variant	MPC545
D11Mit144	PCR amplified length variant	D1206
D11Mit118	PCR amplified length variant	MPC781
D11Mit33	PCR amplified length variant	B422
D11Mit93	PCR amplified length variant	MPC1225
Ccl2	PCR amplified length variant	Scya2-pA, Scya2-pB
Ccl1	PCR amplified length variant	Scya1-pA, Scya1-pB
Om	visible phenotype
D11Mit35	PCR amplified length variant	D562
D11Mit36	PCR amplified length variant	A653
D11Mit38	PCR amplified length variant	D576
D11Mit39	PCR amplified length variant	D575
Mpo	PCR amplified length variant	114.MMMPO

Notes

• Reference
  Authors indicated that Scya1 is a canidate gene for Om.
• Experiment
  Offspring types indicate alleles inherited from F1 parent.
  

CROSS

• Type
  Backcross, male
• Female Parent
  <d> <d> <d> <d> <d> <d> <d> <d> <d> <d> <d> <d> <d> <d> <d>/<d> <d> <d> <d> <d> <d> <d> <d> <d> <d> <d> <d> <d> <d> <d>
• Strain
  BALB/cPas
• Male Parent
  <d> <d> <d> <d> <d> <d> <d> <d> <d> <d> <d> <d> <d> <d> <d>/<c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c> <c>
• Strain
  (BALB/cPas x DDK/Pas)F1
• Allele 1
  c from BALB/cPas
• Allele 2
  d from DDK/Pas

CROSS Data

MC #mice	D11Mit34	D11Mit94	D11Mit96	D11Mit144	D11Mit118	D11Mit33	D11Mit93	Ccl2	Ccl1	Om	D11Mit35	D11Mit36	D11Mit38	D11Mit39	Mpo
76	c	c	c	c	c	c	c	c	c	c	c	c	c	c	c
79	d	d	d	d	d	d	d	d	d	d	d	d	d	d	d
37	.	c	c	c	c	c	c	c	c	c	c	c	c	c	c
35	.	d	d	d	d	d	d	d	d	d	d	d	d	d	d
40	.	.	.	.	c	c	c	c	c	c	c	c	c	c	c
53	.	.	.	.	d	d	d	d	d	d	d	d	d	d	d
24	.	.	.	.	.	.	.	.	c	c	c	c	c	c	c
28	.	.	.	.	.	.	.	.	d	d	d	d	d	d	d
6	.	.	.	.	c	c	c	c	c	c	.	.	.	.	.
11	.	.	.	.	d	d	d	d	d	d	.	.	.	.	.
1	c	d	d	d	d	d	d	d	d	d	d	d	d	d	d
2	c	c	c	c	d	d	d	d	d	d	d	d	d	d	d
2	.	c	c	c	d	d	d	d	d	d	d	d	d	d	d
1	c	c	c	c	c	d	d	d	d	d	d	d	d	d	d
1	d	d	d	d	d	c	c	c	c	c	c	c	c	c	c
1	.	d	d	d	d	c	c	c	c	c	c	c	c	c	c
1	.	c	c	c	c	c	c	c	d	d	d	d	d	d	d
1	c	c	c	c	c	c	c	c	c	c	d	d	d	d	d
1	d	d	d	d	d	d	d	d	d	d	c	c	c	c	c
1	.	c	c	c	c	c	c	c	c	c	d	d	d	d	d
1	.	.	.	.	c	c	c	c	c	c	d	d	d	d	d
1	.	.	.	.	d	d	d	d	d	d	c	c	c	c	c
1	.	.	.	.	.	.	.	.	c	c	d	d	d	d	d
1	c	c	c	c	c	c	c	c	c	c	c	c	d	d	d

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D11Mit34	D11Mit94	1	163	0.613	0.612
D11Mit94	D11Mit96	0	240	0.000	0.000
D11Mit96	D11Mit144	0	240	0.000	0.000
D11Mit144	D11Mit118	4	240	1.667	0.826
D11Mit118	D11Mit33	3	352	0.852	0.490
D11Mit33	D11Mit93	0	352	0.000	0.000
D11Mit93	Ccl2	0	352	0.000	0.000
Ccl2	Ccl1	1	352	0.284	0.284
Ccl1	Om	0	405	0.000	0.000
Om	D11Mit35	6	388	1.546	0.626
D11Mit35	D11Mit36	0	388	0.000	0.000
D11Mit36	D11Mit38	1	388	0.258	0.257
D11Mit38	D11Mit39	0	388	0.000	0.000
D11Mit39	Mpo	0	388	0.000	0.000