Mapping Data

Experiment

• Experiment
  TEXT-Physical Mapping
• Chromosome
  9
• Reference
  J:31470 Hamilton BA, et al., Disruption of the nuclear hormone receptor RORalpha in staggerer mice. Nature. 1996 Feb 22;379(6567):736-9
• ID
  MGI:46394

Genes

Gene	Allele	Assay Type	Description
D9Mit165		overlapping clones	fduA12
D9Mit289		overlapping clones	28A1, adfG7, 287E5
Rora	Rora^sg	overlapping clones	28A1, 287E5, adfG7
D9Mit304		overlapping clones	28A1, 287E5, adfG7
Anxa2		overlapping clones	28A1, 287E5, adfG7
D9Mit339		overlapping clones	28A1, 287E5, adfG7
D9Mit54		overlapping clones	FauG9
D9Mit132		PCR amplified length variant

Notes

• Reference
  The sg mutation is associated with the Rora locus in MGD.
• Experiment
  Physical mapping of several overlapping YAC's, BAC's and P1's was used to map the staggerer locus (sg) to a 160kb interval on Chromosome 9. A 135kb BAC clone contained both sg and a portion of Rora. The gene order obtained from the overlapping clones wasD9Mit165 - D9Mit289 - Rora^sg - Cal1h - D9Mit304 - D9Mit339 - D9Mit54 - D9Mit132. (sg has subsequently been shown to be an allele of Rora. MGD eds)