Mapping Data

Experiment

• Experiment
  CROSS
• Chromosome
  9
• Reference
  J:33856 Matsuda Y, et al., Comparative genome mapping of the ataxia-telangiectasia region in mouse, rat, and Syrian hamster. Genomics. 1996 Jun 15;34(3):347-52
• ID
  MGI:47441

Genes

Gene	Assay Type	Description
D9Mit62	PCR amplified length variant
D9Mit90	PCR amplified length variant
D9Mit2	PCR amplified length variant
D9Mit45	PCR amplified length variant
Cd3d	reported elsewhere
Ncam1	reported elsewhere
D9Mit99	PCR amplified length variant
Atm	Southern analysis	mAtm-3
Npat	Southern analysis	Npat cDNA1
Acat1	Southern analysis	Acat1 cDNA1
D9Mit6	PCR amplified length variant
D9Mit102	PCR amplified length variant
D9Mit48	PCR amplified length variant
D9Mit72	PCR amplified length variant
D9Mit54	PCR amplified length variant

Notes

• Experiment
  Offspring types indicate alleles inherited from F1 parent.
  F1 direction known.
  

CROSS

• Type
  Backcross, female
• Female Parent
  <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b> <b>/<s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s>
• Strain
  (C57BL/6 x M. spretus)F1
• Male Parent
  <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s>/<s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s> <s>
• Strain
  M. spretus
• Allele 1
  b from C57BL/6
• Allele 2
  s from M. spretus

CROSS Data

MC #mice	D9Mit62	D9Mit90	D9Mit2	D9Mit45	Cd3d	Ncam1	D9Mit99	Atm	Npat	Acat1	D9Mit6	D9Mit102	D9Mit48	D9Mit72	D9Mit54
54	s	s	s	s	s	s	s	s	s	s	s	s	s	s	s
57	b	b	b	b	b	b	b	b	b	b	b	b	b	b	b
1	b	s	s	s	s	s	s	s	s	s	s	s	s	s	s
6	s	b	b	b	b	b	b	b	b	b	b	b	b	b	b
6	b	b	s	s	s	s	s	s	s	s	s	s	s	s	s
3	s	s	b	b	b	b	b	b	b	b	b	b	b	b	b
2	b	b	b	s	s	s	s	s	s	s	s	s	s	s	s
1	s	s	s	b	b	b	b	b	b	b	b	b	b	b	b
1	b	b	b	b	s	s	s	s	s	s	s	s	s	s	s
1	s	s	s	s	b	b	b	b	b	b	b	b	b	b	b
1	b	b	b	b	b	s	s	s	s	s	s	s	s	s	s
2	s	s	s	s	s	b	b	b	b	b	b	b	b	b	b
0	b	b	b	b	b	b	s	s	s	s	s	s	s	s	s
1	s	s	s	s	s	s	b	b	b	b	b	b	b	b	b
1	b	b	b	b	b	b	b	s	s	s	s	s	s	s	s
2	s	s	s	s	s	s	s	b	b	b	b	b	b	b	b
0	b	b	b	b	b	b	b	b	b	b	b	s	s	s	s
2	s	s	s	s	s	s	s	s	s	s	s	b	b	b	b
2	b	b	b	b	b	b	b	b	b	b	b	b	b	s	s
0	s	s	s	s	s	s	s	s	s	s	s	s	s	b	b
4	b	b	b	b	b	b	b	b	b	b	b	b	b	b	s
3	s	s	s	s	s	s	s	s	s	s	s	s	s	s	b

Statistics

Marker 1	Marker 2	# Recombinants	Total	% Recombinants	Std Error
D9Mit62	D9Mit90	7	150	4.667	1.722
D9Mit90	D9Mit2	9	150	6.000	1.939
D9Mit2	D9Mit45	3	150	2.000	1.143
D9Mit45	Cd3d	2	150	1.333	0.937
Cd3d	Ncam1	3	150	2.000	1.143
Ncam1	D9Mit99	1	150	0.667	0.664
D9Mit99	Atm	3	150	2.000	1.143
Atm	Npat	0	150	0.000	0.000
Npat	Acat1	0	150	0.000	0.000
Acat1	D9Mit6	0	150	0.000	0.000
D9Mit6	D9Mit102	2	150	1.333	0.937
D9Mit102	D9Mit48	0	150	0.000	0.000
D9Mit48	D9Mit72	2	150	1.333	0.937
D9Mit72	D9Mit54	7	150	4.667	1.722