Mapping Data

Experiment

• Experiment
  TEXT-Physical Mapping
• Chromosome
  17
• Reference
  J:38062 Dagenais SL, et al., A physical map of the mouse H2 Bat5/Db interval. Mamm Genome. 1997 Jan;8(1):39-41
• ID
  MGI:48119

Genes

Gene	Assay Type	Description
Abhd16a	restriction analysis	sd1.113, sd1.51, sd8.41
Gpank1	restriction analysis	sd1.113, sd1.51, sd8.41
Bag6	restriction analysis	sd8.41, sd1.121, sd1.361, sd24.441
Prrc2a	restriction analysis	sd1.121, sd1.361, sd24.441, sd10.24
D17Boy1	restriction analysis	sd10.24, clone 3.1
Tnf	restriction analysis	clone 3.1, JW.1, clone 4.1
Lta	restriction analysis	clone 3.1, JW.1, clone 4.1
Ddx39b	restriction analysis	clone 28.3, clone 19.1, clone 37.1, clone 35.1
Bat1b	restriction analysis	clone 28.3, clone 19.1, clone 37.1, clone 35.1
H2-D1	restriction analysis	clone 35.1

Notes

• Reference
  Authors use Bat5, Bat4, Bat3, Bat2, B144, Tnfa, Tnfb and Bat1 for locus symbols D17H6S82E, D17H6S54E, D17H6S52E, D17H6S51E, D17Boy1, Tnf, Lta, and (D17H6S81E-1 D17H6S81E-2) respectively.
• Experiment
  The following loci were physically ordered in 200kb of genomic DNA from C57BL/10SnCr as follows: D17H6S82E - G5b - 2410045D21Rik - 3110039B05Rik - D17Boy1 - Tnf - Lta - D17H6S81E-1 - D17H6S81E-2 - H2-D. Only 1kb separates D17H6S52E from D17H6S51E which are 24.9kb centromeric of D17Boy1. It is important to note that C57BL/RiJ carries the H2-D^b haplotype. Other H2 haplotypes may differ in the interval spanning Bat5 to H2-D.