Mapping Data

Experiment

• Experiment
  TEXT-QTL
• Chromosome
  4
• Reference
  J:217518 Kelada SN, et al., Integrative genetic analysis of allergic inflammation in the murine lung. Am J Respir Cell Mol Biol. 2014 Sep;51(3):436-45
• ID
  MGI:5706619

Genes

Gene	Assay Type
Dsige	visible phenotype

Notes

• Reference
  The Collaborative Cross (CC) is a large (~1,000 line) panel of recombinant inbred (RI) mouse strains being developed through a community effort (Churchill et al. 2004). The CC combines the genomes of eight genetically diverse founder strains - A/J, C57BL/6J, 129S1/SvImJ, NOD/ShiLtJ, NZO/HlLtJ, CAST/EiJ, PWK/PhJ, and WSB/EiJ - to capture nearly 90% of the known variation present in laboratory mice. CC strains are derived using a unique funnel breeding scheme. Once inbred, the RI CC lines can be used to generate thousands of potential 'outbred' but completely reproducible genomes through the generation of recombinant inbred crosses (RIX). The designation 'PreCC' is used to describe a mapping population of CC mice that is still at incipient stages of inbreeding.
  
  CTC (2004), Churchill, G. A., et al.. The Collaborative Cross, a community resource for the genetic analysis of complex traits. Nat Genet. 36, 1133-7.
  
  
  
  
• Experiment
  Linkage analysis was performed on 151 male PreCC# mice to identify QTL associated with allergen-induced IgE. Mice were obtained from Oak Ridge National Laboratory (Oak Ridge, TN). Each mouse was from a distinct CC line that had undergone 514 generations of inbreeding.
  
  QTL DsIgE maps to 13.95 - 31.66 Mb on Chromosome 4 with a peak LOD score of 7.4 in linkage with allergen-induced IgE. C57BL/6J and A/J alleles contribute to the phenotype at the DsIgE locus.