Mapping Data

Experiment

• Experiment
  TEXT-Physical Mapping
• Chromosome
  5
• Reference
  J:40364 King DP, et al., Positional cloning of the mouse circadian clock gene. Cell. 1997 May 16;89(4):641-53
• ID
  MGI:895086

Genes

Gene	Assay Type	Description
D5Mit307	overlapping clones	YAC 18, YAC 12, YAC 55, BAC 50
D5Ber9	overlapping clones	YAC 18, YAC 12
D5Nwu8	overlapping clones	YAC 12, BAC 52
D5Nwu9	overlapping clones	YAC 12, BAC 52
D5Nwu10	overlapping clones	YAC 12, BAC 52
D5Nwu11	overlapping clones	YAC 12, BAC 52
D5Nwu12	overlapping clones	YAC 12, BAC 52
D5Nwu13	overlapping clones	YAC 12, BAC 52
Tmem165	overlapping clones	YAC 12, YAC 14, BAC 52, BAC 54
Ube2n-ps1	overlapping clones	YAC 12, YAC 14, BAC 52, BAC 54
Clock	overlapping clones	YAC 12, YAC 14, BAC 52, BAC 54
D5Nwu7	overlapping clones	YAC 12, YAC 40, BAC 52, BAC 54, BAC 49, BAC 51, BAC 53
D5Ber1	overlapping clones	YAC 12, YAC 40, BAC 52, BAC 54, BAC 49, BAC 51, BAC 53, BAC 47
D5Nwu14	overlapping clones	BAC 52, BAC 54, BAC 49, BAC 51, BAC 53, BAC 47
D5Nwu1	overlapping clones	YAC 40, BAC 54, BAC 49, BAC 51, BAC 53, BAC 47
D5Nwu2	overlapping clones	YAC 40, BAC 54, BAC 51, BAC 53, BAC 47
D5Nwu3	overlapping clones	YAC 40, BAC 51, BAC 53, BAC 47
D5Nwu5	overlapping clones	YAC 40, BAC 49, BAC 51, BAC 53
D5Nwu4	overlapping clones	YAC 40, BAC 49, BAC 51, BAC 53
D5Nwu6	overlapping clones	YAC 40, BAC 43, BAC 45, BAC 46, BAC 44, BAC 51, BAC 53
D5Mit112	overlapping clones	YAC 55, YAC 40, BAC 43, BAC 45, BAC 46, BAC 44, BAC 48

Notes

• Experiment
  Overlapping YAC and BAC genomic clones were organized by restriction mapping to define and physically map loci within the Clock region of mouse Chromosome 5. The region of interest including Clock encompassed approximately 400kb of genomic DNA flanked proximately by SST site D5Mit307 and distally by SST site D5Mit112. The following physical order was indicated: D5Mit307 - D5Ber9 - D5Nwu8-D5Nwu9 - D5Nwu10 - D5Nwu11 - D5Nwu12 - D5Nwu13 - Tparl - Ube2n-ps11 - Clock - D5Nwu7 - D5Ber1 - D5Nwu14 - D5Nwu1 - D5Nwu2- D5Nwu3 - D5Nwu5 - D5Nwu4 - D5Nwu6 - D5Mit112.