Pou5f1-rs3 Pseudogene Detail

Summary

• Symbol
  Pou5f1-rs3
• Name
  POU domain, class 5, transcription factor 1, related sequence 3
• Synonyms
  Gm2071, Otf3c, Otf3-rs3

• Feature Type
  pseudogene
• IDs
  MGI:101890
  NCBI Gene: 100039157
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:3894344-3895117 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 1.96 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  17
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_101890	pseudogene	Chr3:3894005-3895284 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0011997	pseudogene	Chr3:580293-581066 (+)
A/J	MGP_AJ_G0011988	pseudogene	Chr3:930372-931145 (+)
AKR/J	MGP_AKRJ_G0011947	pseudogene	Chr3:702680-703453 (+)
BALB/cJ	MGP_BALBcJ_G0011966	pseudogene	Chr3:662019-662792 (+)
C3H/HeJ	MGP_C3HHeJ_G0011843	pseudogene	Chr3:941282-942055 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012264	pseudogene	Chr3:957199-957972 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010717	pseudogene	Chr3:427819-428597 (+)
CAST/EiJ	MGP_CASTEiJ_G0011624	pseudogene	Chr3:987308-988082 (+)
CBA/J	MGP_CBAJ_G0011816	pseudogene	Chr3:619320-620093 (+)
DBA/2J	MGP_DBA2J_G0011870	pseudogene	Chr3:577216-577989 (+)
FVB/NJ	MGP_FVBNJ_G0011878	pseudogene	Chr3:548183-548956 (+)
LP/J	MGP_LPJ_G0011939	pseudogene	Chr3:918910-919683 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0011878	pseudogene	Chr3:948970-949743 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012269	pseudogene	Chr3:562379-563152 (+)
PWK/PhJ	MGP_PWKPhJ_G0011474	pseudogene	Chr3:895127-895901 (+)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0011646	pseudogene	Chr3:567235-568008 (+)

Homology

• Gene Tree
  Pou5f1-rs3
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000103245 (Evidence)
• NCBI Gene
  100039157

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000103245	Ensembl Gene Model | MGI Sequence Detail	774	C57BL/6J
transcript	ENSMUST00000193335	Ensembl | MGI Sequence Detail	774	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGD-MRK-13073, MGD-MRK-18716, MGD-MRK-19412, MGI:3780238

References

• Summaries
  All 7
• Earliest
  J:11320 Siracusa LD, et al., Chromosomal location of the octamer transcription factors, Otf-1, Otf-2, and Otf-3, defines multiple Otf-3-related sequences dispersed in the mouse genome. Genomics. 1991 Jun;10(2):313-26