Pou5f1-rs1 Pseudogene Detail

Summary

• Symbol
  Pou5f1-rs1
• Name
  POU domain, class 5, transcription factor 1, related sequence 1
• Synonyms
  Gm21053, Otf3a, Otf-3rs, Otf3-rs1

• Feature Type
  pseudogene
• IDs
  MGI:101892
  NCBI Gene: 100846986
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:159121343-159121736 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, Syntenic
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  82 from dbSNP Build 142
• Strain Annotations
  1
• RFLP
  3

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_101892	pseudogene	Chr1:159121343-159121736 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  2
• Genomic Mutations
  2 involving Pou5f1-rs1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  3
• RefSeq
  1

• NCBI Gene
  100846986

Representative Sequences			Length	Strain/Species
genomic	100846986	NCBI Gene Model | MGI Sequence Detail	394	C57BL/6J
transcript	NR_144489	RefSeq | MGI Sequence Detail	394	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGD-MRK-13064, MGD-MRK-13071, MGD-MRK-18718, MGD-MRK-19410, MGI:5434410

References

• Summaries
  All 10

  Phenotypes 2
• Earliest
  J:11320 Siracusa LD, et al., Chromosomal location of the octamer transcription factors, Otf-1, Otf-2, and Otf-3, defines multiple Otf-3-related sequences dispersed in the mouse genome. Genomics. 1991 Jun;10(2):313-26
• Latest
  J:224363 Scarola M, et al., Epigenetic silencing of Oct4 by a complex containing SUV39H1 and Oct4 pseudogene lncRNA. Nat Commun. 2015;6:7631