Fabp3-ps1 Pseudogene Detail

Summary

• Symbol
  Fabp3-ps1
• Name
  fatty acid binding protein 3, muscle and heart, pseudogene 1
• Synonyms
  Fabph-3, Fabph3, Fabph-ps1

• Feature Type
  pseudogene
• IDs
  MGI:101929
  NCBI Gene: 14074
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr10:86567851-86568252 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 10, 43.10 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  97 from dbSNP Build 142
• Strain Annotations
  11

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_101929	pseudogene	Chr10:86567617-86568292 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0017614	protein coding gene	Chr10:87712349-87712799 (-)
A/J	MGP_AJ_G0017593	protein coding gene	Chr10:84813376-84814031 (-)
AKR/J	no annotation
BALB/cJ	MGP_BALBcJ_G0017556	protein coding gene	Chr10:85075880-85076535 (-)
C3H/HeJ	MGP_C3HHeJ_G0017379	protein coding gene	Chr10:87196971-87197626 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0018013	protein coding gene	Chr10:90680997-90683407 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	MGP_CBAJ_G0017348	protein coding gene	Chr10:94448586-94449059 (-)
DBA/2J	MGP_DBA2J_G0017454	protein coding gene	Chr10:83915382-83920744 (-)
FVB/NJ	no annotation
LP/J	MGP_LPJ_G0017528	protein coding gene	Chr10:88406905-88407388 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0017477	protein coding gene	Chr10:96020675-96021125 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0018050	protein coding gene	Chr10:87046629-87047093 (-)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  Fabp3-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  1
• Chemically induced (other)
  1
• Genomic Mutations
  1 involving Fabp3-ps1
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  3 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  16
• RefSeq
  1

• Ensembl
  ENSMUSG00000056366 (Evidence)
• NCBI Gene
  14074

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000056366	Ensembl Gene Model | MGI Sequence Detail	402	C57BL/6J
transcript	ENSMUST00000070435	Ensembl | MGI Sequence Detail	402	Not Applicable

Molecular
Reagents

• All nucleic 3

  Genomic 1

  cDNA 2

Other
Accession IDs

MGD-MRK-18760, MGD-MRK-9699, MGD-MRK-9703

References

• Summaries
  All 12

  Phenotypes 5
• Earliest
  J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
• Latest
  J:74548 Benson KF, et al., Molecular Characterization of the Mouse In(10)17Rk Inversion and Identification of a Novel Muscle-Specific Gene at the Proximal Breakpoint. Genetics. 2002 Jan;160(1):279-87

TSS for Fabp3-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr98792	Chr10:86568282-86568293 (-)	-36 bp