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Ptprm Gene Detail
Summary
  • Symbol
    Ptprm
  • Name
    protein tyrosine phosphatase receptor type M
  • Synonyms
    RPTPmu
  • Feature Type
    protein coding gene
  • IDs
    MGI:102694
    NCBI Gene: 19274
  • Alliance
    gene page
  • Transcription Start Sites
    25 TSS
Location &
Maps
more
  • Sequence Map
    Chr17:66973942-67661452 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 17, 37.88 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    21989 from dbSNP Build 142
  • Strain Annotations
    18
  • RFLP
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_102694
 protein coding gene Chr17:66973843-67661486 (-)
129S1/SvImJ MGP_129S1SvImJ_G0023990
 protein coding gene Chr17:68902099-69627124 (-)
A/J MGP_AJ_G0023948
 protein coding gene Chr17:66806598-67515706 (-)
AKR/J MGP_AKRJ_G0023917
 protein coding gene Chr17:67753475-68460915 (-)
BALB/cJ MGP_BALBcJ_G0023949
 protein coding gene Chr17:66760424-67460289 (-)
C3H/HeJ MGP_C3HHeJ_G0023713
 protein coding gene Chr17:68637248-69353276 (-)
C57BL/6NJ MGP_C57BL6NJ_G0024395
 protein coding gene Chr17:71515033-72235486 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0021841
 protein coding gene Chr17:62791050-63473151 (-)
CAST/EiJ MGP_CASTEiJ_G0023195
 protein coding gene Chr17:68978590-69729677 (-)
CBA/J MGP_CBAJ_G0023689
 protein coding gene Chr17:74344861-75124259 (-)
DBA/2J MGP_DBA2J_G0023817
 protein coding gene Chr17:65538263-66233355 (-)
FVB/NJ MGP_FVBNJ_G0023783
 protein coding gene Chr17:65034213-65725154 (-)
LP/J MGP_LPJ_G0023899
 protein coding gene Chr17:69604093-70335363 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0023811
 protein coding gene Chr17:74414707-75160685 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0024439
 protein coding gene Chr17:68184817-68906566 (-)
PWK/PhJ MGP_PWKPhJ_G0022941
 protein coding gene Chr17:64813088-65549124 (-)
SPRET/EiJ MGP_SPRETEiJ_G0022752
 protein coding gene Chr17:64887046-65634626 (-)
WSB/EiJ MGP_WSBEiJ_G0023261
 protein coding gene Chr17:68939895-69656474 (-)



Homology
more
  • Human Ortholog
    PTPRM, protein tyrosine phosphatase receptor type M
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PTPRM, protein tyrosine phosphatase receptor type M
  • Synonyms
    hR-PTPu, PTPRL1, RPTPM, R-PTP-MU, RPTPU
  • Links
    NCBI Gene ID: 5797
    neXtProt AC: NX_P28827
    UniProt: P28827

  • Chr Location
    18p11.23; chr18:7566782-8406861 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    5 phenotypes from 2 alleles in 2 genetic backgrounds
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous mutation of this gene results in impaired flow-induced dilation in mesenteric resistance arteries.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    46
  • GO References
    8
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    1271
  • Tissues
    225
  • cDNA Data
    49
  • Literature Summary
    14
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000033278 Ensembl Gene Model | MGI Sequence Detail 687511 C57BL/6J ±  kb
    transcript ENSMUST00000037974 Ensembl | MGI Sequence Detail 5186 Not Applicable  
    polypeptide ENSMUSP00000045603 Ensembl | MGI Sequence Detail 1486 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 59
      cDNA 52
      Primer pair 2
      Other 5

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-19598
    References
    more
    • Summaries
      All 56
      Developmental Gene Expression 14
      Gene Ontology 8
      Phenotypes 13
    • Earliest
      J:14621 Gebbink MF, et al., Cloning, expression and chromosomal localization of a new putative receptor-like protein tyrosine phosphatase. FEBS Lett. 1991 Sep 23;290(1-2):123-30
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory