Pafah1b1-ps1 Pseudogene Detail

Summary

• Symbol
  Pafah1b1-ps1
• Name
  platelet-activating factor acetylhydrolase, isoform 1b, beta1 subunit, pseudogene 1
• Synonyms
  Lis3, Mdsh3, Pafaha-ps1

• Feature Type
  pseudogene
• IDs
  MGI:103115
  NCBI Gene: 18473
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr3:96314833-96316375 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 41.82 cM
• Mapping Data
  4 experiments

Strain
Comparison

• SNPs within 2kb
  169 from dbSNP Build 142
• Strain Annotations
  18
• PCR
  1
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_103115	pseudogene	Chr3:96314693-96316780 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0012298	pseudogene	Chr3:97263105-97266000 (-)
A/J	MGP_AJ_G0012292	pseudogene	Chr3:94186519-94188274 (-)
AKR/J	MGP_AKRJ_G0012259	pseudogene	Chr3:96388908-96390225 (-)
BALB/cJ	MGP_BALBcJ_G0012275	pseudogene	Chr3:93988007-93989397 (-)
C3H/HeJ	MGP_C3HHeJ_G0012141	pseudogene	Chr3:96666863-96669057 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0012587	pseudogene	Chr3:100799253-100802350 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0010974	pseudogene	Chr3:90454348-90455605 (-)
CAST/EiJ	MGP_CASTEiJ_G0011913	pseudogene	Chr3:95952432-95953740 (-)
CBA/J	MGP_CBAJ_G0012119	pseudogene	Chr3:104510579-104514133 (-)
DBA/2J	MGP_DBA2J_G0012175	pseudogene	Chr3:93482430-93483720 (-)
FVB/NJ	MGP_FVBNJ_G0012177	pseudogene	Chr3:91515987-91517291 (-)
LP/J	MGP_LPJ_G0012245	pseudogene	Chr3:98562276-98563582 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012181	pseudogene	Chr3:110584383-110591982 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012592	pseudogene	Chr3:96010096-96011549 (-)
PWK/PhJ	MGP_PWKPhJ_G0011758	pseudogene	Chr3:93333508-93335422 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0011573	pseudogene	Chr3:94285998-94287146 (-)
WSB/EiJ	MGP_WSBEiJ_G0011944	pseudogene	Chr3:96426201-96427622 (-)

Homology

• Gene Tree
  Pafah1b1-ps1
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Pafah1b1-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000097041 (Evidence)
• NCBI Gene
  18473

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000097041	Ensembl Gene Model | MGI Sequence Detail	1543	C57BL/6J
transcript	ENSMUST00000181263	Ensembl | MGI Sequence Detail	1046	Not Applicable

Molecular
Reagents

• All nucleic 5

  Genomic 2

  cDNA 1

  Primer pair 1

  Other 1

Other
Accession IDs

MGD-MRK-23979

References

• Summaries
  All 14

  Developmental Gene Expression 1

  Diseases 1

  Phenotypes 4
• Earliest
  J:22395 Peterfy M, et al., Lissencephaly-1 is one of the most conserved proteins between mouse and human: a single amino-acid difference in 410 residues. Gene. 1994 Dec 15;150(2):415-6
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426