Mif-ps1 Pseudogene Detail

Summary

• Symbol
  Mif-ps1
• Name
  macrophage migration inhibitory factor, pseudogene 1
• Synonyms
  Gm8762

• Feature Type
  pseudogene
• IDs
  MGI:103175
  NCBI Gene: 667686
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr1:136716920-136717258 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 59.97 cM
• Mapping Data
  8 experiments

Strain
Comparison

• SNPs within 2kb
  127 from dbSNP Build 142
• Strain Annotations
  16
• RFLP
  2

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_103175	pseudogene	Chr1:136716806-136717310 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0014115	pseudogene	Chr9:11805747-11807167 (-)
A/J	MGP_AJ_G0010342	pseudogene	Chr1:135306032-135306370 (-)
AKR/J	MGP_AKRJ_G0010312	pseudogene	Chr1:139350828-139351166 (-)
BALB/cJ	MGP_BALBcJ_G0010318	pseudogene	Chr1:135653584-135653922 (-)
C3H/HeJ	MGP_C3HHeJ_G0010251	pseudogene	Chr1:139446931-139447269 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0010592	pseudogene	Chr1:145677903-145678241 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0013578	pseudogene	Chr9:11902721-11903527 (-)
CBA/J	MGP_CBAJ_G0010220	pseudogene	Chr1:150726275-150726613 (-)
DBA/2J	MGP_DBA2J_G0013984	pseudogene	Chr9:11625730-11626077 (-)
FVB/NJ	MGP_FVBNJ_G0010279	pseudogene	Chr1:132948560-132948898 (-)
LP/J	MGP_LPJ_G0014065	pseudogene	Chr9:11900119-11900466 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010235	pseudogene	Chr1:156363593-156363931 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010554	pseudogene	Chr1:139113273-139113611 (-)
PWK/PhJ	MGP_PWKPhJ_G0013390	pseudogene	Chr9:11693532-11697741 (-)
SPRET/EiJ	no annotation
WSB/EiJ	MGP_WSBEiJ_G0013633	pseudogene	Chr9:11626432-11626779 (-)

Homology

• Gene Tree
  Mif-ps1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Mif-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000104360 (Evidence)
• NCBI Gene
  667686

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000104360	Ensembl Gene Model | MGI Sequence Detail	339	C57BL/6J
transcript	ENSMUST00000193486	Ensembl | MGI Sequence Detail	339	Not Applicable

Molecular
Reagents

• All nucleic 6

  Genomic 4

  cDNA 2

Other
Accession IDs

MGD-MRK-24043, MGI:3646806

References

• Summaries
  All 15

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:56825 Kozak CA, et al., Identification and genetic mapping of differentially expressed genes in mice differing at the If1 interferon regulatory locus. Mamm Genome. 1999 Sep;10(9):853-7

TSS for Mif-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr13947	Chr1:136717310-136717311 (-)	-53 bp