Amy2-ps1 Pseudogene Detail

Summary

• Symbol
  Amy2-ps1
• Name
  amylase 2, pseudogene 1
• Synonyms
  EG668723

• Feature Type
  pseudogene
• IDs
  MGI:104546
  NCBI Gene: 668723
• Member of
  Amy cluster
• Alliance
  gene page
• Transcription Start Sites
  4 TSS

Location &
Maps

• Sequence Map
  Chr3:113089565-113114013 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 49.35 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  733 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_104546	pseudogene	Chr3:113089550-113114013 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0040341	pseudogene	Chr3:114943336-114960955 (-)
A/J	MGP_AJ_G0040314	pseudogene	Chr3:111233712-111251760 (-)
AKR/J	MGP_AKRJ_G0040251	pseudogene	Chr3:113975630-113998817 (-)
BALB/cJ	MGP_BALBcJ_G0040314	pseudogene	Chr3:111038391-111065659 (-)
C3H/HeJ	MGP_C3HHeJ_G0039943	pseudogene	Chr3:114384278-114407983 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0040915	pseudogene	Chr3:119143651-119165070 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0037327	pseudogene	Chr3:107086536-107093309 (-)
CAST/EiJ	MGP_CASTEiJ_G0039023	pseudogene	Chr3:113812238-113845058 (-)
CBA/J	MGP_CBAJ_G0039907	pseudogene	Chr3:123286381-123308712 (-)
DBA/2J	MGP_DBA2J_G0040115	pseudogene	Chr3:110460750-110479863 (-)
FVB/NJ	MGP_FVBNJ_G0040070	pseudogene	Chr3:108194973-108215786 (-)
LP/J	MGP_LPJ_G0040162	pseudogene	Chr3:116474931-116501223 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	MGP_NZOHlLtJ_G0041012	pseudogene	Chr3:113588283-113612405 (-)
PWK/PhJ	MGP_PWKPhJ_G0038714	pseudogene	Chr3:110194913-110225306 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0038418	pseudogene	Chr3:111884289-111904100 (-)
WSB/EiJ	MGP_WSBEiJ_G0039262	pseudogene	Chr3:114197607-114231357 (-)

Homology

• Gene Tree
  Amy2-ps1
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  2
• Chemically induced (other)
  1
• Radiation induced
  1
• Genomic Mutations
  2 involving Amy2-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  21
• RefSeq
  1

• Ensembl
  ENSMUSG00000081506 (Evidence)
• NCBI Gene
  668723

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000081506	Ensembl Gene Model | MGI Sequence Detail	24449	C57BL/6J
transcript	ENSMUST00000122117	Ensembl | MGI Sequence Detail	1117	Not Applicable

Molecular
Reagents

• All nucleic 3

  Genomic 3

Other
Accession IDs

MGD-MRK-25978, MGI:3645475

References

• Summaries
  All 12

  Diseases 1

  Phenotypes 4
• Earliest
  J:7963 Wiebauer K, et al., A 78-kilobase region of mouse chromosome 3 contains salivary and pancreatic amylase genes and a pseudogene. Proc Natl Acad Sci U S A. 1985 Aug;82(16):5446-9
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Amy2-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr35248	Chr3:113114010-113114014 (-)	1 bp
Tssr35247	Chr3:113102477-113102507 (-)	11,521 bp
Tssr35246	Chr3:113102422-113102428 (-)	11,588 bp
Tssr35245	Chr3:113102398-113102421 (-)	11,603 bp