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Rab3ip Gene Detail
Summary
  • Symbol
    Rab3ip
  • Name
    RAB3A interacting protein
  • Synonyms
    Gtpat12, Rabin3, SSX2 interacting protein
  • Feature Type
    protein coding gene
  • IDs
    MGI:105933
    NCBI Gene: 216363
  • Alliance
    gene page
  • Transcription Start Sites
    7 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:116741685-116786361 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 10, 64.96 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    1716 from dbSNP Build 142
  • Strain Annotations
    18
  • PCR
    1
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_105933
 protein coding gene Chr10:116741685-116786674 (-)
129S1/SvImJ MGP_129S1SvImJ_G0017748
 protein coding gene Chr10:119708737-119760673 (-)
A/J MGP_AJ_G0017724
 protein coding gene Chr10:115099150-115144360 (-)
AKR/J MGP_AKRJ_G0017686
 protein coding gene Chr10:118431165-118478042 (-)
BALB/cJ MGP_BALBcJ_G0017687
 protein coding gene Chr10:115497277-115542944 (-)
C3H/HeJ MGP_C3HHeJ_G0017512
 protein coding gene Chr10:118666998-118712651 (-)
C57BL/6NJ MGP_C57BL6NJ_G0018144
 protein coding gene Chr10:123874657-123921522 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0015824
 protein coding gene Chr10:109687945-109734385 (-)
CAST/EiJ MGP_CASTEiJ_G0017074
 protein coding gene Chr10:118968186-119017634 (-)
CBA/J MGP_CBAJ_G0017481
 protein coding gene Chr10:128744480-128793461 (-)
DBA/2J MGP_DBA2J_G0017586
 protein coding gene Chr10:114238426-114282904 (-)
FVB/NJ MGP_FVBNJ_G0017581
 protein coding gene Chr10:113191319-113237992 (-)
LP/J MGP_LPJ_G0017661
 protein coding gene Chr10:120300393-120350860 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0017610
 protein coding gene Chr10:131618701-131664897 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0018182
 protein coding gene Chr10:118509466-118557190 (-)
PWK/PhJ MGP_PWKPhJ_G0016856
 protein coding gene Chr10:114339643-114383033 (-)
SPRET/EiJ MGP_SPRETEiJ_G0016646
 protein coding gene Chr10:117322375-117369024 (-)
WSB/EiJ MGP_WSBEiJ_G0017134
 protein coding gene Chr10:118702126-118751607 (-)



Homology
more
  • Human Ortholog
    RAB3IP, RAB3A interacting protein
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RAB3IP, RAB3A interacting protein
  • Synonyms
    RABIN3, RABIN8
  • Links
    NCBI Gene ID: 117177
    neXtProt AC: NX_Q96QF0
    UniProt: Q96QF0

  • Chr Location
    12q15; chr12:69738242-69823204 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    9 phenotypes from 2 alleles in 2 genetic backgrounds
    17 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous null mice are fertile and show no obvious abnormalities.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    33
  • GO References
    10
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    839
  • Tissues
    65
  • cDNA Data
    63
  • Literature Summary
    4
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 216363 NCBI Gene Model | MGI Sequence Detail 44677 C57BL/6J ±  kb
    transcript NM_001359645 RefSeq | MGI Sequence Detail 2880 ZRU/MplStud  
    polypeptide Q68EF0 UniProt | EBI | MGI Sequence Detail 428 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    • UniProt
      5 Sequences
    • Protein Ontology
      PR:000013624 Rab-3A-interacting protein
      (term hierarchy)
    • InterPro Domains
      IPR009449 GDP/GTP exchange factor Sec2, N-terminal
      IPR040351 Guanine nucleotide exchange factor RAB3IL/RAB3IP/Sec2
    • GlyGen
      Q68EF0 1 site, 1 O-linked glycan (1 site)
    Molecular
    Reagents
    less
    • All nucleic 67
      cDNA 64
      Primer pair 3

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGD-MRK-33612
    References
    more
    • Summaries
      All 48
      Developmental Gene Expression 4
      Gene Ontology 10
      Phenotypes 17
    • Earliest
      J:137335 Roderick TH, Chromosomal inversions in studies of mammalian mutagenesis. Genetics. 1979 May;92(1 Pt 1 Suppl):s121-6
    • Latest
      J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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    Funding Information
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    Send questions and comments to User Support.     		last database update
    11/12/2024
    MGI 6.24     		The Jackson Laboratory