Rny3 Gene Detail

Summary

• Symbol
  Rny3
• Name
  RNA, Y3 small cytoplasmic (associated with Ro protein)

• Feature Type
  scRNA gene
• IDs
  MGI:107304
  NCBI Gene: 19874
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  Chr6:47758558-47758658 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 6, 22.94 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  75 from dbSNP Build 142
• Strain Annotations
  18
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_107304	scRNA gene	Chr6:47758558-47758659 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0009774	unclassified non-coding RNA gene	Chr6:46685623-46685724 (+)
A/J	MGP_AJ_G0009760	unclassified non-coding RNA gene	Chr6:44535434-44535535 (+)
AKR/J	MGP_AKRJ_G0009744	unclassified non-coding RNA gene	Chr6:46057786-46057887 (+)
BALB/cJ	MGP_BALBcJ_G0009743	unclassified non-coding RNA gene	Chr6:44887762-44887863 (+)
C3H/HeJ	MGP_C3HHeJ_G0009676	unclassified non-coding RNA gene	Chr6:46108720-46108821 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0009986	unclassified non-coding RNA gene	Chr6:47707518-47707619 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0008802	unclassified non-coding RNA gene	Chr6:42241726-42241827 (+)
CAST/EiJ	MGP_CASTEiJ_G0009495	unclassified non-coding RNA gene	Chr6:45838253-45838354 (+)
CBA/J	MGP_CBAJ_G0009649	unclassified non-coding RNA gene	Chr6:49724378-49724479 (+)
DBA/2J	MGP_DBA2J_G0009677	unclassified non-coding RNA gene	Chr6:44476432-44476533 (+)
FVB/NJ	MGP_FVBNJ_G0009693	unclassified non-coding RNA gene	Chr6:44114273-44114374 (+)
LP/J	MGP_LPJ_G0009770	unclassified non-coding RNA gene	Chr6:46587683-46587784 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0009662	unclassified non-coding RNA gene	Chr6:52601745-52601846 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0009959	unclassified non-coding RNA gene	Chr6:45994624-45994725 (+)
PWK/PhJ	MGP_PWKPhJ_G0009417	unclassified non-coding RNA gene	Chr6:43994609-43994710 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009253	unclassified non-coding RNA gene	Chr6:45420257-45420358 (+)
WSB/EiJ	MGP_WSBEiJ_G0009596	unclassified non-coding RNA gene	Chr6:45984980-45985081 (+)

Homology

• Gene Tree
  Rny3
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  1
• Endonuclease-mediated
  1
• Find Mice (IMSR)
  1 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  2
• GO References
  1

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  24
• RefSeq
  1

• Ensembl
  ENSMUSG00000064945 (Evidence)
• NCBI Gene
  19874

Representative Sequences			Length	Strain/Species
genomic	19874	NCBI Gene Model | MGI Sequence Detail	101	C57BL/6J
transcript	NR_024202	RefSeq | MGI Sequence Detail	101	Not Specified

Molecular
Reagents

• All nucleic 3

  Genomic 2

  cDNA 1

Other
Accession IDs

MGD-MRK-35770

References

• Summaries
  All 9

  Gene Ontology 1

  Phenotypes 1
• Earliest
  J:35627 Farris AD, et al., Genes for murine Y1 and Y3 Ro RNAs have class 3 RNA polymerase III promoter structures and are unlinked on mouse chromosome 6. Gene. 1996 Sep 26;174(1):35-42
• Latest
  J:205377 Reed JH, et al., Ro60 requires Y3 RNA for cell surface exposure and inflammation associated with cardiac manifestations of neonatal lupus. J Immunol. 2013 Jul 1;191(1):110-6

TSS for Rny3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr56097	Chr6:47758552-47758562 (+)	-1 bp
Tssr56098	Chr6:47758573-47758612 (+)	35 bp