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Scp2-ps2 Pseudogene Detail
Summary
  • Symbol
    Scp2-ps2
  • Name
    sterol carrier protein 2, pseudogene 2
  • Feature Type
    pseudogene
  • IDs
    MGI:107679
    NCBI Gene: 20282
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr9:123136577-123137054 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 9, 73.92 cM, cytoband F
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    105 from dbSNP Build 142
  • Strain Annotations
    17
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_107679
 pseudogene Chr9:123136573-123137054 (-)
129S1/SvImJ MGP_129S1SvImJ_G0014265
 pseudogene Chr9:126340834-126341260 (-)
A/J MGP_AJ_G0014281
 pseudogene Chr9:121508994-121509420 (-)
AKR/J MGP_AKRJ_G0014206
 pseudogene Chr9:124767463-124767840 (-)
BALB/cJ MGP_BALBcJ_G0014231
 pseudogene Chr9:121432751-121433177 (-)
C3H/HeJ MGP_C3HHeJ_G0014062
 pseudogene Chr9:125214252-125214678 (-)
C57BL/6NJ MGP_C57BL6NJ_G0014685
 pseudogene Chr9:129839336-129839702 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0008967
 pseudogene Chr1:1607647-1608057 (-)
CAST/EiJ MGP_CASTEiJ_G0012086
 pseudogene Chr3:158360336-158361103 (+)
CBA/J MGP_CBAJ_G0014045
 pseudogene Chr9:134541860-134542278 (-)
DBA/2J MGP_DBA2J_G0014128
 pseudogene Chr9:120958574-120959000 (-)
FVB/NJ no annotation
LP/J MGP_LPJ_G0014219
 pseudogene Chr9:126675244-126677327 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0014161
 pseudogene Chr9:135387315-135387719 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0014654
 pseudogene Chr9:125229743-125230169 (-)
PWK/PhJ MGP_PWKPhJ_G0011923
 pseudogene Chr3:152742156-152742945 (+)
SPRET/EiJ MGP_SPRETEiJ_G0011740
 pseudogene Chr3:155687224-155688009 (+)
WSB/EiJ MGP_WSBEiJ_G0012112
 pseudogene Chr3:158483289-158484078 (+)



Homology
less
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
Sequences &
Gene Models
less
  • All Sequences
    22
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000058492 Ensembl Gene Model | MGI Sequence Detail 478 C57BL/6J ±  kb
transcript ENSMUST00000072166 Ensembl | MGI Sequence Detail 478 Not Applicable  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 2
    Genomic 2

    Microarray probesets 1
Other
Accession IDs
less
MGD-MRK-36254
References
more
  • Summaries
    All 6
  • Earliest
    J:34922 Raabe M, et al., Structure and chromosomal assignment of the murine sterol carrier protein 2 gene (Scp2) and two related pseudogenes by in situ hybridization. Cytogenet Cell Genet. 1996;73(4):279-81
  • Latest
    J:80594 Kiss H, et al., Comparative human/murine sequence analysis of the common eliminated region 1 from human 3p21.3. Mamm Genome. 2002 Nov;13(11):646-55
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory