Atp5k-ps1 Pseudogene Detail

Summary

• Symbol
  Atp5k-ps1
• Name
  ATP synthase, H+ transporting, mitochondrial F1F0 complex, subunit E, pseudogene 1
• Synonyms
  Atp5k-rs3

• Feature Type
  pseudogene
• IDs
  MGI:107703
  NCBI Gene: 101055750
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr8:86550926-86551232 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 8, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  114 from dbSNP Build 142
• Strain Annotations
  1
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_107703	pseudogene	Chr8:86550926-86551232 (+)
129S1/SvImJ	no annotation
A/J	no annotation
AKR/J	no annotation
BALB/cJ	no annotation
C3H/HeJ	no annotation
C57BL/6NJ	no annotation
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	no annotation
DBA/2J	no annotation
FVB/NJ	no annotation
LP/J	no annotation
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  30 phenotype references
  

• All Mutations and Alleles
  1
• Radiation induced
  1
• Genomic Mutations
  1 involving Atp5k-ps1
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  4
• RefSeq
  1

• NCBI Gene
  101055750

Representative Sequences			Length	Strain/Species
genomic	101055750	NCBI Gene Model | MGI Sequence Detail	307	C57BL/6J

Molecular
Reagents

• All nucleic 2

  Genomic 2

  
  

  Microarray probesets 1

Other
Accession IDs

MGD-MRK-35758, MGD-MRK-36279, MGI:107292

References

• Summaries
  All 35

  Phenotypes 30
• Earliest
  J:13049 Gruneberg H, Genetical studies on the skeleton of the mouse. XVIII. Three genes for syndactylism. J Genet. 1956;54(1):113-145
• Latest
  J:348117 Okuma H, et al., N-terminal domain on dystroglycan enables LARGE1 to extend matriglycan on alpha-dystroglycan and prevents muscular dystrophy. Elife. 2023 Feb 1;12

TSS for Atp5k-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr78564	Chr8:86550923-86550959 (+)	15 bp