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Nop16 Gene Detail
Summary
  • Symbol
    Nop16
  • Name
    NOP16 nucleolar protein
  • Synonyms
    D13Wsu177e
  • Feature Type
    protein coding gene
  • IDs
    MGI:107862
    NCBI Gene: 28126
  • Alliance
    gene page
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:54731998-54737903 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 13, 28.83 cM
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    302 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_107862
 protein coding gene Chr13:54731998-54737921 (-)
129S1/SvImJ MGP_129S1SvImJ_G0020572
 protein coding gene Chr13:53988561-53996374 (-)
A/J MGP_AJ_G0020526
 protein coding gene Chr13:52009193-52015096 (-)
AKR/J MGP_AKRJ_G0020504
 protein coding gene Chr13:53537860-53543796 (-)
BALB/cJ MGP_BALBcJ_G0020522
 protein coding gene Chr13:52240754-52247065 (-)
C3H/HeJ MGP_C3HHeJ_G0020321
 protein coding gene Chr13:53363247-53369186 (-)
C57BL/6NJ MGP_C57BL6NJ_G0020956
 protein coding gene Chr13:55645101-55651009 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0018538
 protein coding gene Chr13:50004051-50010066 (-)
CAST/EiJ MGP_CASTEiJ_G0019835
 protein coding gene Chr13:53442358-53448495 (-)
CBA/J MGP_CBAJ_G0020281
 protein coding gene Chr13:57758032-57764024 (-)
DBA/2J MGP_DBA2J_G0020404
 protein coding gene Chr13:51577948-51583676 (-)
FVB/NJ MGP_FVBNJ_G0020383
 protein coding gene Chr13:51025428-51031511 (-)
LP/J MGP_LPJ_G0020480
 protein coding gene Chr13:54265387-54271290 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0020412
 protein coding gene Chr13:57253016-57259813 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0020999
 protein coding gene Chr13:53133093-53138998 (-)
PWK/PhJ MGP_PWKPhJ_G0019591
 protein coding gene Chr13:51563540-51569591 (-)
SPRET/EiJ MGP_SPRETEiJ_G0019418
 protein coding gene Chr13:52046886-52054139 (-)
WSB/EiJ MGP_WSBEiJ_G0019897
 protein coding gene Chr13:53470883-53476800 (-)



Homology
more
  • Human Ortholog
    NOP16, NOP16 nucleolar protein
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    NOP16, NOP16 nucleolar protein
  • Synonyms
    HSPC111, HSPC185
  • Links
    NCBI Gene ID: 51491
    neXtProt AC: NX_Q9Y3C1
    UniProt: Q9Y3C1

  • Chr Location
    5q35.2; chr5:176383946-176388927 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    9
  • Chemically induced (other)
    1
  • Endonuclease-mediated
    2
  • Gene trapped
    5
  • Targeted
    1
  • Genomic Mutations
    2 involving Nop16
  • Find Mice (IMSR)
    11 strains or lines available
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    6
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    712
  • Tissues
    2
  • cDNA Data
    68
  • Literature Summary
    1
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000025869 Ensembl Gene Model | MGI Sequence Detail 5906 C57BL/6J ±  kb
transcript ENSMUST00000148222 Ensembl | MGI Sequence Detail 790 Not Applicable  
polypeptide ENSMUSP00000122180 Ensembl | MGI Sequence Detail 181 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 69
    cDNA 68
    Primer pair 1

    Microarray probesets 3
Other
Accession IDs
less
MGD-MRK-36439, MGI:2145151
References
more
  • Summaries
    All 32
    Developmental Gene Expression 1
    Diseases 1
    Gene Ontology 3
    Phenotypes 8
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:326541 Cyagen Biosciences Inc., Cyagen Biosciences Website. 2022;
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
11/12/2024
MGI 6.24 		The Jackson Laboratory