Psmb6-ps2 Pseudogene Detail

Summary

• Symbol
  Psmb6-ps2
• Name
  proteasome (prosome, macropain) subunit, beta type 6, pseudogene 2
• Synonyms
  EG383650, Lmp19-ps1, Psmb6-rs1

• Feature Type
  pseudogene
• IDs
  MGI:109264
  NCBI Gene: 383650
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr1:101313611-101314315 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 1, 49.26 cM
• Mapping Data
  5 experiments

Strain
Comparison

• SNPs within 2kb
  233 from dbSNP Build 142
• Strain Annotations
  18
• RFLP
  1

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_109264	pseudogene	Chr1:101313575-101314388 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0010263	pseudogene	Chr1:103289377-103290094 (+)
A/J	MGP_AJ_G0010257	pseudogene	Chr1:99777597-99778301 (+)
AKR/J	MGP_AKRJ_G0010227	pseudogene	Chr1:102438578-102439295 (+)
BALB/cJ	MGP_BALBcJ_G0010232	pseudogene	Chr1:99813632-99814336 (+)
C3H/HeJ	MGP_C3HHeJ_G0010171	pseudogene	Chr1:102858728-102859432 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0010504	pseudogene	Chr1:107337667-107338371 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009214	pseudogene	Chr1:93978589-93979304 (+)
CAST/EiJ	MGP_CASTEiJ_G0009994	pseudogene	Chr1:101873829-101874544 (+)
CBA/J	MGP_CBAJ_G0010140	pseudogene	Chr1:110946797-110947501 (+)
DBA/2J	MGP_DBA2J_G0010171	pseudogene	Chr1:98840503-98841220 (+)
FVB/NJ	MGP_FVBNJ_G0010190	pseudogene	Chr1:97817006-97817710 (+)
LP/J	MGP_LPJ_G0010251	pseudogene	Chr1:104568444-104569161 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0010149	pseudogene	Chr1:114879797-114880514 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0010469	pseudogene	Chr1:102578601-102579305 (+)
PWK/PhJ	MGP_PWKPhJ_G0009897	pseudogene	Chr1:97956994-97957699 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0009713	pseudogene	Chr1:101344059-101344762 (+)
WSB/EiJ	MGP_WSBEiJ_G0010058	pseudogene	Chr1:102391977-102392681 (+)

Homology

• Gene Tree
  Psmb6-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  2
• Radiation induced
  1
• Genomic Mutations
  3 involving Psmb6-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22
• RefSeq
  1

• Ensembl
  ENSMUSG00000100222 (Evidence)
• NCBI Gene
  383650

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000100222	Ensembl Gene Model | MGI Sequence Detail	705	C57BL/6J
transcript	ENSMUST00000187074	Ensembl | MGI Sequence Detail	705	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

Other
Accession IDs

MGD-MRK-24111, MGD-MRK-38309, MGI:3643878

References

• Summaries
  All 12

  Phenotypes 4
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:93219 Everett CA, et al., Genetic influences on ovulation of primary oocytes in LT/Sv strain mice. Reproduction. 2004 11;128(5):565-571