Cct3-ps1 Pseudogene Detail

Summary

• Symbol
  Cct3-ps1
• Name
  chaperonin containing Tcp1, subunit 3 (gamma) pseudogene 1
• Synonyms
  TRiC5-P5

• Feature Type
  pseudogene
• IDs
  MGI:109293
  NCBI Gene: 632982
• Alliance
  gene page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr4:52900599-52902683 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 4, 28.57 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  145 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_109293	pseudogene	Chr4:52900550-52902880 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0012658	pseudogene	Chr4:51504697-51507405 (+)
A/J	MGP_AJ_G0012647	pseudogene	Chr4:49532148-49534923 (+)
AKR/J	MGP_AKRJ_G0012617	pseudogene	Chr4:50889309-50891474 (+)
BALB/cJ	MGP_BALBcJ_G0012630	pseudogene	Chr4:49714593-49716642 (+)
C3H/HeJ	MGP_C3HHeJ_G0012490	pseudogene	Chr4:51443853-51445938 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0012955	pseudogene	Chr4:53423622-53425680 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0009679	pseudogene	Chr11:86087295-86088701 (-)
CAST/EiJ	MGP_CASTEiJ_G0012245	pseudogene	Chr4:51074358-51078418 (+)
CBA/J	MGP_CBAJ_G0012470	pseudogene	Chr4:55238013-55242914 (+)
DBA/2J	MGP_DBA2J_G0012528	pseudogene	Chr4:49510387-49512774 (+)
FVB/NJ	MGP_FVBNJ_G0012528	pseudogene	Chr4:48738022-48740151 (+)
LP/J	MGP_LPJ_G0012599	pseudogene	Chr4:51616845-51618880 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0012536	pseudogene	Chr4:58471896-58473983 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0012959	pseudogene	Chr4:51120251-51123196 (+)
PWK/PhJ	MGP_PWKPhJ_G0012072	pseudogene	Chr4:49465693-49467759 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0010223	pseudogene	Chr11:91622057-91623461 (-)
WSB/EiJ	MGP_WSBEiJ_G0012267	pseudogene	Chr4:51016084-51019328 (+)

Homology

• Gene Tree
  Cct3-ps1
  

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000083937 (Evidence)
• NCBI Gene
  632982

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000083937	Ensembl Gene Model | MGI Sequence Detail	2085	C57BL/6J
transcript	ENSMUST00000118023	Ensembl | MGI Sequence Detail	1647	Not Applicable

Molecular
Reagents

• All nucleic 2

  Genomic 1

  Other 1

Other
Accession IDs

MGD-MRK-38338, MGI:3651587

References

• Summaries
  All 9
• Earliest
  J:30880 Sevigny G, et al., Structure of the gene coding for the mouse TRiC-P5 subunit of the cytosolic chaperonin TRiC. Genomics. 1996 Jan 1;31(1):107-10

TSS for Cct3-ps1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr37283	Chr4:52900608-52900620 (+)	15 bp