Cycs-ps2 Pseudogene Detail

Summary

• Symbol
  Cycs-ps2
• Name
  cytochrome c, pseudogene 2

• Feature Type
  pseudogene
• IDs
  MGI:109499
  NCBI Gene: 13065
• Alliance
  gene page

Location &
Maps

• Sequence Map
  Chr5:101453444-101453735 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 5, 48.56 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  156 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_109499	pseudogene	Chr5:101453377-101453892 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0013194	pseudogene	Chr5:102867368-102867659 (+)
A/J	MGP_AJ_G0013179	pseudogene	Chr5:99014262-99014553 (+)
AKR/J	MGP_AKRJ_G0013146	pseudogene	Chr5:102265456-102265747 (+)
BALB/cJ	MGP_BALBcJ_G0013160	pseudogene	Chr5:100028511-100028802 (+)
C3H/HeJ	MGP_C3HHeJ_G0013007	pseudogene	Chr5:102614989-102615280 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0013523	pseudogene	Chr5:107117326-107117617 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0011698	pseudogene	Chr5:94240928-94241235 (+)
CAST/EiJ	MGP_CASTEiJ_G0012738	pseudogene	Chr5:101279932-101280223 (+)
CBA/J	MGP_CBAJ_G0012978	pseudogene	Chr5:110853626-110853917 (+)
DBA/2J	MGP_DBA2J_G0013059	pseudogene	Chr5:99197659-99197950 (+)
FVB/NJ	MGP_FVBNJ_G0013061	pseudogene	Chr5:98000701-98000992 (+)
LP/J	MGP_LPJ_G0013129	pseudogene	Chr5:103447307-103447598 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0013080	pseudogene	Chr5:115877421-115877712 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0013525	pseudogene	Chr5:101742447-101742738 (+)
PWK/PhJ	MGP_PWKPhJ_G0012554	pseudogene	Chr5:97646663-97646954 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0012350	pseudogene	Chr5:99434390-99434678 (+)
WSB/EiJ	MGP_WSBEiJ_G0012773	pseudogene	Chr5:102099075-102099366 (+)

Homology

• Gene Tree
  Cycs-ps2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  6 phenotype references
  

• All Mutations and Alleles
  3
• Chemically induced (other)
  1
• Radiation induced
  1
• Spontaneous
  1
• Genomic Mutations
  3 involving Cycs-ps2
• Find Mice (IMSR)
  0 strains or lines available

Expression

• Assay Results
  706

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  1

• Ensembl
  ENSMUSG00000105965 (Evidence)
• NCBI Gene
  13065

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000105965	Ensembl Gene Model | MGI Sequence Detail	292	C57BL/6J
transcript	ENSMUST00000197114	Ensembl | MGI Sequence Detail	292	Not Applicable

Molecular
Reagents

• All nucleic 1

  Genomic 1

Other
Accession IDs

MGD-MRK-39498

References

• Summaries
  All 11

  Phenotypes 6
• Earliest
  J:134667 Roderick TH, et al., Two radiation-induced chromosomal inversions in mice (Mus musculus). Proc Natl Acad Sci U S A. 1970 Oct;67(2):961-7
• Latest
  J:38101 Limbach KJ, et al., Characterization of a mouse somatic cytochrome c gene and three cytochrome c pseudogenes. Nucleic Acids Res. 1985 Jan 25;13(2):617-30