Odf2l MGI Mouse Gene Detail - MGI:1098600 - outer dense fiber of sperm tails 2-like

Symbol

Odf2l
Name

outer dense fiber of sperm tails 2-like
Synonyms

4733401D09Rik, 9630045K08Rik

Feature Type

protein coding gene
IDs

MGI:1098600
NCBI Gene: 52184
Alliance

gene page
Transcription Start Sites

2 TSS

Sequence Map

Chr3:144824349-144859676 bp, + strand
From Ensembl annotation of GRCm39
View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 3, 69.36 cM, cytoband H3
Mapping Data

4 experiments

SNPs within 2kb

976 from dbSNP Build 142
Strain Annotations

18

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1098600	protein coding gene	Chr3:144824330-144859676 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0027958	protein coding gene	Chr3:148503821-148543804 (+)
A/J	MGP_AJ_G0027917	protein coding gene	Chr3:143224273-143259050 (+)
AKR/J	MGP_AKRJ_G0027883	protein coding gene	Chr3:147019540-147054938 (+)
BALB/cJ	MGP_BALBcJ_G0027929	protein coding gene	Chr3:143036479-143072966 (+)
C3H/HeJ	MGP_C3HHeJ_G0027659	protein coding gene	Chr3:147387447-147426653 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0028372	protein coding gene	Chr3:153615844-153656617 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0025711	protein coding gene	Chr3:138319015-138354316 (+)
CAST/EiJ	MGP_CASTEiJ_G0027112	protein coding gene	Chr3:147341328-147380678 (+)
CBA/J	MGP_CBAJ_G0027634	protein coding gene	Chr3:158941362-158984573 (+)
DBA/2J	MGP_DBA2J_G0027774	protein coding gene	Chr3:142378973-142415360 (+)
FVB/NJ	MGP_FVBNJ_G0027741	protein coding gene	Chr3:139786357-139824056 (+)
LP/J	MGP_LPJ_G0027885	protein coding gene	Chr3:149903676-149940486 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0027774	protein coding gene	Chr3:167276123-167316024 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0028431	protein coding gene	Chr3:146617577-146656055 (+)
PWK/PhJ	MGP_PWKPhJ_G0026835	protein coding gene	Chr3:142222572-142259484 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0026663	protein coding gene	Chr3:144789215-144825201 (+)
WSB/EiJ	MGP_WSBEiJ_G0027192	protein coding gene	Chr3:147575578-147613882 (+)

Human Ortholog

ODF2L, outer dense fiber of sperm tails 2 like

Vertebrate Orthologs

2

Vertebrate Orthology Source

Alliance of Genome Resources

Human Ortholog

ODF2L, outer dense fiber of sperm tails 2 like
Links

HGNC:29225

NCBI Gene ID: 57489

neXtProt AC: NX_Q9ULJ1

UniProt: Q9ULJ1
Chr Location

1p22.3; chr1:86346824-86396342 (-) GRCh38

MGI Vertebrate Homology

Odf2l stringent orthology
1 human;1 mouse;1 rat
HCOP

vertebrate homology predictions: ODF2L
Gene Tree

Odf2l

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References

1 with disease annotations

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Phenotype Summary

3 phenotypes from 1 allele in 1 genetic background
7 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	integument	immune system	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	neoplasm	vision/eye

Click cells to view annotations.

All Mutations and Alleles

8
Endonuclease-mediated

1
Gene trapped

6
Radiation induced

1
Genomic Mutations

1 involving Odf2l
Incidental Mutations

Mutagenetix , APF
Find Mice (IMSR)

44 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

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All GO Annotations

14
GO References

6

Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.

Biological Process

carbohydrate derivative metabolism	cell differentiation	cell population proliferation	cellular component organization	DNA-templated transcription	establishment of localization	homeostatic process	immune system process	lipid metabolic process	programmed cell death	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	membraneless organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	protein-containing complex	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

707
Tissues

1
cDNA Data

12
Literature Summary

1

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase odf2l

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All Sequences

130
RefSeq

59
UniProt

9
CCDS

CCDS17891.1, CCDS51087.1, CCDS51088.1

Ensembl

ENSMUSG00000028256 (Evidence)
NCBI Gene

52184

			Length	Strain/Species	Flank
genomic	ENSMUSG00000028256	Ensembl Gene Model \| MGI Sequence Detail	35328	C57BL/6J	± kb
transcript	ENSMUST00000098538	Ensembl \| MGI Sequence Detail	2564	Not Applicable
polypeptide	ENSMUSP00000096140	Ensembl \| MGI Sequence Detail	642	Not Applicable

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UniProt

9 Sequences
Protein Ontology

PR:000011599 protein BCAP

(term hierarchy)
InterPro Domains

IPR026099 Outer dense fibre protein 2-related

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All nucleic 14

cDNA 13

Primer pair 1

Microarray probesets 4

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MGI:1913949, MGI:2445219

Summaries

All 37

Developmental Gene Expression 1

Diseases 1

Gene Ontology 6

Phenotypes 7
Earliest

J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
Latest

J:345621 Adams DJ, et al., Genetic determinants of micronucleus formation in vivo. Nature. 2024 Mar;627(8002):130-136

TSS for Odf2l:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr32282	Chr3:144824325-144824383 (+)	5 bp
Tssr32283	Chr3:144824644-144824695 (+)	321 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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